PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03089.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 1097aa MW: 121524 Da PI: 5.8519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03089.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.6	4.7e-18	699	748	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P + ++K +Ka+ L +++eYI+ Lq Dr03089.1 699 RSKHSATEQRRRSKINDRFQKLRELIPCS----DQKRDKASFLFEVIEYIRFLQ 748 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1097 aa Download sequence
MAPNADSPVQ TQVALAVPNH SISSEHHGSR SSEAKHVARR RVFVQTETGC VLGIELDRGD 60 NVHTVKRRLQ LALNVPTEES SLTYGDRVLK NDLSAIRNDS PLLLRRNLIQ RSSSSPCLSP 120 TAKDLLQRDR SGPIEILGCS NSCSMKQLVK DAVKAIKNGV DPLPVHSGLG GAYYFRNSRG 180 ERVAIVKPTD EEPFAPNNPK GFVGKTLGQP GLKRSVRVGE TGYREVAAYL LDYDHFANVP 240 PTVLVKITHS IFHVNEGVSC SKNKPHDENS SAMSKIASFQ QFIPHDFDAS DHGTSCFPVA 300 AVHRIGILDI RIFNTDRHAG NLLVKKLRGG DGRFGGQMDL IPIDHGLCLP ENLEDPYFEW 360 IHWPQASIPF SDDELKYIED LDPSRDSDML RSELPMIREA CLRVLVLCTI FLKEAAAFGL 420 CLAEIGEMMS REFKGGLEEE PSELEILCIE SKRLVTEHSV FISEAESGGE DDIQFEIDCG 480 EEDELTMQVG VQPSSHSRNP FSRLQILEEE DEDGDGDGDE DDTELSPLRS VLPRNVSKLS 540 MSLKDVSLAE KHNQLKQQGW FSKGGKTSTK TNYSYGVKHP NGNRSANEQL PASQSFVKLA 600 DMSDDQWGAF LEKFQELLPG AFRDRKSRVA GQRQRQRLAN LRPAAGAASS AARRGSAFGS 660 LPFLSDDDED FGKQDGDASH KVGLTGKMDR RSTDPNTPRS KHSATEQRRR SKINDRFQKL 720 RELIPCSDQK RDKASFLFEV IEYIRFLQDK VQKYEASCPE WNQENAWEKV YFRSIWKNAQ 780 QNNSQGAVDD ITDPAQVLKN GSAASPGFVL SGRFDDSNIP VVPAMVSNTH THNPSDSDNI 840 AADVSFKQME NPHVAGLAVP LQPNMYAAVG NETLVSQTQQ RLIPDGDDFA SQSHSQLDCA 900 VSSDLLNEQE ELTIDEGTIA VSGVYSRGVL SSLTQSLQSS GVDVTQTSIS VHINLGKRLL 960 TMRPSMAPTV ISTKLQIFLE IWLNILGMKM MLPYPLLYHF SNLAIACLWT TFEHNLPKIE 1020 DHCALYWYSL VLLPLQSMLG ENSAGLLGGS YGTIPRCLKS EDHDDPSTDH RAIGHSMAGF 1080 SGEESVRMNK KPRLDNR

Sequence ? help Back to Top

Protein Sequence Length: 1097 aa Download sequence

MAPNADSPVQ TQVALAVPNH SISSEHHGSR SSEAKHVARR RVFVQTETGC VLGIELDRGD  60
NVHTVKRRLQ LALNVPTEES SLTYGDRVLK NDLSAIRNDS PLLLRRNLIQ RSSSSPCLSP  120
TAKDLLQRDR SGPIEILGCS NSCSMKQLVK DAVKAIKNGV DPLPVHSGLG GAYYFRNSRG  180
ERVAIVKPTD EEPFAPNNPK GFVGKTLGQP GLKRSVRVGE TGYREVAAYL LDYDHFANVP  240
PTVLVKITHS IFHVNEGVSC SKNKPHDENS SAMSKIASFQ QFIPHDFDAS DHGTSCFPVA  300
AVHRIGILDI RIFNTDRHAG NLLVKKLRGG DGRFGGQMDL IPIDHGLCLP ENLEDPYFEW  360
IHWPQASIPF SDDELKYIED LDPSRDSDML RSELPMIREA CLRVLVLCTI FLKEAAAFGL  420
CLAEIGEMMS REFKGGLEEE PSELEILCIE SKRLVTEHSV FISEAESGGE DDIQFEIDCG  480
EEDELTMQVG VQPSSHSRNP FSRLQILEEE DEDGDGDGDE DDTELSPLRS VLPRNVSKLS  540
MSLKDVSLAE KHNQLKQQGW FSKGGKTSTK TNYSYGVKHP NGNRSANEQL PASQSFVKLA  600
DMSDDQWGAF LEKFQELLPG AFRDRKSRVA GQRQRQRLAN LRPAAGAASS AARRGSAFGS  660
LPFLSDDDED FGKQDGDASH KVGLTGKMDR RSTDPNTPRS KHSATEQRRR SKINDRFQKL  720
RELIPCSDQK RDKASFLFEV IEYIRFLQDK VQKYEASCPE WNQENAWEKV YFRSIWKNAQ  780
QNNSQGAVDD ITDPAQVLKN GSAASPGFVL SGRFDDSNIP VVPAMVSNTH THNPSDSDNI  840
AADVSFKQME NPHVAGLAVP LQPNMYAAVG NETLVSQTQQ RLIPDGDDFA SQSHSQLDCA  900
VSSDLLNEQE ELTIDEGTIA VSGVYSRGVL SSLTQSLQSS GVDVTQTSIS VHINLGKRLL  960
TMRPSMAPTV ISTKLQIFLE IWLNILGMKM MLPYPLLYHF SNLAIACLWT TFEHNLPKIE  1020
DHCALYWYSL VLLPLQSMLG ENSAGLLGGS YGTIPRCLKS EDHDDPSTDH RAIGHSMAGF  1080
SGEESVRMNK KPRLDNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-42	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr03089.1