PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03096.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 555aa MW: 61387 Da PI: 6.3975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03096.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	233	281	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Dr03096.1 233 NSHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 281 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MDLGEKEKFG LESFQHSGSS VDQWQFAIPS SVGVVPGLWN SNNNNNSNNS NPINQGSLRV 60 GESWKGGMLM QNSGGLLSCF NGSGFSGMVN GFGVSDSVNQ QQNVVKIENQ EQKGGFHGVR 120 ASSNESGEAE FSGGGQEEIH GSGSAAGDSS SKEVGFKKRK RSNQDEIELE KTHSCPQLCV 180 ETTKENDEIK GKGLQNTASI SPAKQVGKQA KDNSDSPKED YIHVRARRGQ ATNSHSLAER 240 VRREKISERM KLLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LAAVNPRLDF 300 NIEGILAKDL LQFQGGFSAE MIHPQYHPSQ QGFIQAGIPA MVNPPDALRK ALNSQLSTMN 360 LYKEPTTQVP NTWDEELRNV VQMTFSANPT IAEKPRDGEC RRRKVGNSTD NDRTMAASAS 420 AFHVHNMFIN FCSVAATLDS PLQAEAAAMI LALEECINRN WWPDHILNDC IGLINLLDDF 480 QISVAWHIDL EARRLRALFH QLQNPCLEFI NRDDNLIADA LSKHACLNPE LSLFAKRMQL 540 PFWLYKACSS MNIVF

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MDLGEKEKFG LESFQHSGSS VDQWQFAIPS SVGVVPGLWN SNNNNNSNNS NPINQGSLRV  60
GESWKGGMLM QNSGGLLSCF NGSGFSGMVN GFGVSDSVNQ QQNVVKIENQ EQKGGFHGVR  120
ASSNESGEAE FSGGGQEEIH GSGSAAGDSS SKEVGFKKRK RSNQDEIELE KTHSCPQLCV  180
ETTKENDEIK GKGLQNTASI SPAKQVGKQA KDNSDSPKED YIHVRARRGQ ATNSHSLAER  240
VRREKISERM KLLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LAAVNPRLDF  300
NIEGILAKDL LQFQGGFSAE MIHPQYHPSQ QGFIQAGIPA MVNPPDALRK ALNSQLSTMN  360
LYKEPTTQVP NTWDEELRNV VQMTFSANPT IAEKPRDGEC RRRKVGNSTD NDRTMAASAS  420
AFHVHNMFIN FCSVAATLDS PLQAEAAAMI LALEECINRN WWPDHILNDC IGLINLLDDF  480
QISVAWHIDL EARRLRALFH QLQNPCLEFI NRDDNLIADA LSKHACLNPE LSLFAKRMQL  540
PFWLYKACSS MNIVF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	162	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	3e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr03096.1