PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03189.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 465aa MW: 50818.6 Da PI: 8.5501

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03189.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2e-41	177	253	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls ak+yhr+h+vCe hsk+p+v+vsgle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Dr03189.1 177 CQVEGCNIDLSGAKDYHRKHRVCENHSKCPKVIVSGLERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 253 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDWNARTPPP WDWESLALFS GKISELPKGE QESQWRIDGI GNGSVYSSGV GACSGSEFFN 60 GCSPKSSFSA SNDSSSKKSV MKVPGLNSLG ADGFSQNISK KGELTRVDDT GNSPDVVPAV 120 GPNEQMIGLK LGKRTYFEDV CAGSNTKSAS SSASVTPSST SVKKPKVSQQ GTQASYCQVE 180 GCNIDLSGAK DYHRKHRVCE NHSKCPKVIV SGLERRFCQQ CSRFHDLSEF DQKKRSCRRR 240 LSDHNARRRK PQPETISFNS ARLASSFYDD RHQMNLLVNR VPFGHTRPNM NSTWDASWDF 300 KLMQTRGSWI KSTKPGVFDG QLGLSSGGLS NTNSSLRSDL DRLLPFKGTT AEVLNQGLEA 360 SAAASNLDGA PDLRRALSLL STDTWGSAEP GLTSLVPVVD KSQTKGGLPA MQVMSSASDL 420 WKDEQPLDQQ ARVLPFNLHS NGSQFQEFQL KAPYEAAFFD SDHIH

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDWNARTPPP WDWESLALFS GKISELPKGE QESQWRIDGI GNGSVYSSGV GACSGSEFFN  60
GCSPKSSFSA SNDSSSKKSV MKVPGLNSLG ADGFSQNISK KGELTRVDDT GNSPDVVPAV  120
GPNEQMIGLK LGKRTYFEDV CAGSNTKSAS SSASVTPSST SVKKPKVSQQ GTQASYCQVE  180
GCNIDLSGAK DYHRKHRVCE NHSKCPKVIV SGLERRFCQQ CSRFHDLSEF DQKKRSCRRR  240
LSDHNARRRK PQPETISFNS ARLASSFYDD RHQMNLLVNR VPFGHTRPNM NSTWDASWDF  300
KLMQTRGSWI KSTKPGVFDG QLGLSSGGLS NTNSSLRSDL DRLLPFKGTT AEVLNQGLEA  360
SAAASNLDGA PDLRRALSLL STDTWGSAEP GLTSLVPVVD KSQTKGGLPA MQVMSSASDL  420
WKDEQPLDQQ ARVLPFNLHS NGSQFQEFQL KAPYEAAFFD SDHIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	250	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	6e-62	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr03189.1