PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03222.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HB-other

Protein Properties

Length: 764aa MW: 88025.2 Da PI: 8.1518

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03222.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.7	7.4e-07	638	670	18	50
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqN 50 + ++nr ps + ++L+++l+L+ rqV+ WF N Dr03222.1 638 VLAENRFPSISVQRKLSHELDLPSRQVRAWFRN 670 55789**************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MAMRAFYNEI KSMKLREVPA YLKPKFTWEN IKKSADQAVD RYIDKYIETS SVEPLFHVCI 60 GGMIFSYFVA LPHERRHLEH QQQHGGVESI IEKGRCSPSV ISSKVTLGFD RFPIFSFLIV 120 GVKDMILQPS VIKFEIVLMD QQLQDHDQKE KETQTTQKRL ICYTKRRSSL FDKEINSNLN 180 PTPQSQMRFK IAYQRRCKAK PRYHTRRRGM RNTMLEGKPK LTLQLISDTS LAKCQSSSKI 240 LPERTTLGDK CQSAADIGES RIMARRRRRK RKKNNVVRDE ASHLRRRARY LLIKMKQEQN 300 LIDAYTGDGW KGRSREKLKP VMELQRARKE ILKCKLGIRD AIRQLDLLKC EEIVEDSVVD 360 ADENVSREHV FPGDQGWFCK FCECKRGILD VINAHLGTCF SVNSGWEDIF KEATNPDVDN 420 ACLNSTGEWP SEDSADEDYD PETNCNNHSR TVTDESESSD ACSSSGVYYT SDEASSYSNR 480 PRNHYLDGTF GHIINEHFVD SGEAGDCDIT NYRRQRRDVD YKKLHDEMFG KERSDKEQSE 540 EDEDWGPHRR KRRRDAGCVD ENGCSSTAVK ESDSREKKPV FRIPTNAVEV GRWFRNARYA 600 ALKSRKSQAQ ISSQLQVNNP TEETDTDGKN SDEKLQLVLA ENRFPSISVQ RKLSHELDLP 660 SRQVRAWFRN VACFSRRADV QCKITSEKTV LGSEENPASQ DNLLAAEHQH YLVEMERLCS 720 IQDKLLNLKA LLSCTDEDQS SSKDLLKEQT TIFVPIAELT EKSQ

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MAMRAFYNEI KSMKLREVPA YLKPKFTWEN IKKSADQAVD RYIDKYIETS SVEPLFHVCI  60
GGMIFSYFVA LPHERRHLEH QQQHGGVESI IEKGRCSPSV ISSKVTLGFD RFPIFSFLIV  120
GVKDMILQPS VIKFEIVLMD QQLQDHDQKE KETQTTQKRL ICYTKRRSSL FDKEINSNLN  180
PTPQSQMRFK IAYQRRCKAK PRYHTRRRGM RNTMLEGKPK LTLQLISDTS LAKCQSSSKI  240
LPERTTLGDK CQSAADIGES RIMARRRRRK RKKNNVVRDE ASHLRRRARY LLIKMKQEQN  300
LIDAYTGDGW KGRSREKLKP VMELQRARKE ILKCKLGIRD AIRQLDLLKC EEIVEDSVVD  360
ADENVSREHV FPGDQGWFCK FCECKRGILD VINAHLGTCF SVNSGWEDIF KEATNPDVDN  420
ACLNSTGEWP SEDSADEDYD PETNCNNHSR TVTDESESSD ACSSSGVYYT SDEASSYSNR  480
PRNHYLDGTF GHIINEHFVD SGEAGDCDIT NYRRQRRDVD YKKLHDEMFG KERSDKEQSE  540
EDEDWGPHRR KRRRDAGCVD ENGCSSTAVK ESDSREKKPV FRIPTNAVEV GRWFRNARYA  600
ALKSRKSQAQ ISSQLQVNNP TEETDTDGKN SDEKLQLVLA ENRFPSISVQ RKLSHELDLP  660
SRQVRAWFRN VACFSRRADV QCKITSEKTV LGSEENPASQ DNLLAAEHQH YLVEMERLCS  720
IQDKLLNLKA LLSCTDEDQS SSKDLLKEQT TIFVPIAELT EKSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	RRRRRKR
2	265	273	RRRRRKRKK
3	266	272	RRRRKRK
4	266	296	RRRRKRKKNNVVRDEASHLRRRARYLLIKMK
5	266	272	RRRRRKR
6	267	297	RRRRKRKKNNVVRDEASHLRRRARYLLIKMK
7	267	273	RRRRRKR
8	268	298	RRRRKRKKNNVVRDEASHLRRRARYLLIKMK
9	269	273	RKRKK
10	269	299	RRRRKRKKNNVVRDEASHLRRRARYLLIKMK
11	270	300	RRRRKRKKNNVVRDEASHLRRRARYLLIKMK
12	550	554	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	5e-62	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	Dr03222.1