PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr03228.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 254aa    MW: 28918.8 Da    PI: 4.4762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr03228.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-145398555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  Dr03228.1 53 NIVMERNRRRKLNERLYSLRSVVPTI-----TKMDKASIIKDAIDYIQELQ 98
               5679*********************7.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MADMGAEYNF YWETKRFLEE EELDSWGFEE LLSGYSESSS PEEAGSSSTA AKNIVMERNR  60
RRKLNERLYS LRSVVPTITK MDKASIIKDA IDYIQELQEE ERRIISEISE LECGRPAEEQ  120
RVCVTEMMDC VIDPFVPQTK KKRTNSMSPP TSSHSWSPVT SPSIEIIDLR VCEFGERTLV  180
VSISCNKKRD TMIKLCKVFE SLNLNIISAN ITSISGRLLH SLFVETEDMD SVQLKDMIES  240
AINELDAPVS SISY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-38bHLH family protein