PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03234.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 153aa MW: 17382.7 Da PI: 7.8435

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03234.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.9e-40	14	114	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C++dC+l+pyfpa++p++fa+vh++FGasnv ++l+ lp ++r +a++s+ +eA++ra+dPvyG+v++i+ lq+++ ++++ela+++++ Dr03234.1 14 RCAACKYLRRRCSADCILSPYFPASHPQRFACVHRIFGASNVARMLQILPVHQRAQAAESISFEAHWRAQDPVYGCVRIINMLQHEIYESQQELARTQAQ 113 6***********************************************************************************************9988 PP DUF260 101 l 101 l Dr03234.1 114 L 114 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence
MSESNSNSAS NSRRCAACKY LRRRCSADCI LSPYFPASHP QRFACVHRIF GASNVARMLQ 60 ILPVHQRAQA AESISFEAHW RAQDPVYGCV RIINMLQHEI YESQQELART QAQLAMYTAR 120 QPTEASSVIA QPQENLILDN SNFLNFQDLH DLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	4e-44	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr03234.1