PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03294.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 331aa MW: 37201.8 Da PI: 6.7748

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03294.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	7e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + ++++g++R++k+c++rw++yl Dr03294.1 14 KGPWSPEEDAKLKKYIEENGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.1	1.5e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ Ed+++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Dr03294.1 70 GFSEAEDQIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKKYIE ENGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEAEDQIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RPETLSSSRL SSIENSGDEL NGMHCNSPTQ SLSASAIERM QLHMQLQGLC NPFSFYNHPA 180 LWPKHHLQMD RPLHSQQTDA IITAPVSQVT EDYRLSQQGI NLPMSATVQE ELGFSSSSSS 240 TVFNSEVAGL QAELRELIYG RNESFGGQSS DNQITIPDCL KDMNEGKEHM NWWPNNTIED 300 KYSSPISSWD SASGFQPDSL IQDFMSCYDV L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-94	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr03294.1