PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03370.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

WRKY

Protein Properties

Length: 1135aa MW: 126527 Da PI: 9.371

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.2e-29	136	194	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+YYrC++a +Cpvkkkv+rsaed+++++ tYegeH+h Dr03370.1 136 VKDGYQWRKYGQKVTRDNPSPRAYYRCSFApSCPVKKKVQRSAEDKSILVATYEGEHTH 194 58*************************99************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1135 aa Download sequence
MDSTWTNNND YSSLSLXLHV GPPPLLGEAP REGKKEPSTH DDHQRKESEV LEVELNQMSE 60 ENKRLSETLS AVFAHYTALR NQLHDLISLS GKRKSCESSH EDGGAMECKK PREEHRATKI 120 SKVCVRTDPX DTGLIVKDGY QWRKYGQKVT RDNPSPRAYY RCSFAPSCPV KKKVQRSAED 180 KSILVATYEG EHTHGNMDST TIAVDLTQPD VKPPEIRRVM VEQMASSLAK DPSFTDALAS 240 AISGRINLQL SPAPISSMDL KNPINGARSS DSLVESLFHR RIDFHPARKP SSVQSVGGDF 300 HXETLNAGAS SQMPPVSTGA LSVGKKSEGA GELVEHGLDS ELSFKITYRR IGAGLENLGN 360 TCYLNSVLQC LTYTEPFAAY LQSGKHKSSC HTAGFCAMCA LQSHVMDALR STGKILSPLH 420 LVKNLRCISR NFRNSRQEDA HEYMVNLLES MHKCCLPSGV PSESPVAFEK SLVHKIFGGR 480 LRSQVKCTQC SYCSNKFDPF LDLSLEITKA DSLHKAFARF TAVEELDDGK KQYQCQHCKQ 540 KVRALKQLTI HKAPYVLTIH LKRFGSSIPG QKIDKRVEFG PALDLKPFLS EPHDDLKYTL 600 YGVLVHAGWS THSGHYYCYV RTSSGMWHSL DDKQVFQVSE KTVLAQKAYM LFYVRDRSTT 660 TKRQVDAICK ENRAENVSGH KVVSHAARQN TPLKEAASFQ EKGANLPKEI SISHNKSHAK 720 LKEALALQNS NNSLTKELQT TALSKDSSNL SAITKTGSQL MMEEFLHIFQ AKDSAAASRT 780 VDVPLISNVD TNANCQNIIT DRELNNRPPR PGHMVDSKHS GMTEATQKEA NEHARIGNQA 840 CENKDPVNDX CGQKVGENLF VQKKFYEQTA KBSLGDCCQT APKRRKLDKF TLERTMCFGR 900 KQLFLSVLSL QKRKKKRCKR SRVNSRKGMK HKTGENPQSD DCGASTSKAV LNVSSNSIHS 960 SRKXSRSPLD LKKXSEGIND VKCCNGSSMN TNKGAMEEMS NKVLSAHEQS KNFLDSSADR 1020 HKARETAVLK NADHQVYLSL LMRGLKETHV AQWDDMDSPS FQSNGSXDAG NNAIGYVPDE 1080 WDEDYDRGKM KKMKKAKRSF DGPNPFQEAA NLKAQKKXNP NVNRRPSSAN TPFRI

Sequence ? help Back to Top

Protein Sequence Length: 1135 aa Download sequence

MDSTWTNNND YSSLSLXLHV GPPPLLGEAP REGKKEPSTH DDHQRKESEV LEVELNQMSE  60
ENKRLSETLS AVFAHYTALR NQLHDLISLS GKRKSCESSH EDGGAMECKK PREEHRATKI  120
SKVCVRTDPX DTGLIVKDGY QWRKYGQKVT RDNPSPRAYY RCSFAPSCPV KKKVQRSAED  180
KSILVATYEG EHTHGNMDST TIAVDLTQPD VKPPEIRRVM VEQMASSLAK DPSFTDALAS  240
AISGRINLQL SPAPISSMDL KNPINGARSS DSLVESLFHR RIDFHPARKP SSVQSVGGDF  300
HXETLNAGAS SQMPPVSTGA LSVGKKSEGA GELVEHGLDS ELSFKITYRR IGAGLENLGN  360
TCYLNSVLQC LTYTEPFAAY LQSGKHKSSC HTAGFCAMCA LQSHVMDALR STGKILSPLH  420
LVKNLRCISR NFRNSRQEDA HEYMVNLLES MHKCCLPSGV PSESPVAFEK SLVHKIFGGR  480
LRSQVKCTQC SYCSNKFDPF LDLSLEITKA DSLHKAFARF TAVEELDDGK KQYQCQHCKQ  540
KVRALKQLTI HKAPYVLTIH LKRFGSSIPG QKIDKRVEFG PALDLKPFLS EPHDDLKYTL  600
YGVLVHAGWS THSGHYYCYV RTSSGMWHSL DDKQVFQVSE KTVLAQKAYM LFYVRDRSTT  660
TKRQVDAICK ENRAENVSGH KVVSHAARQN TPLKEAASFQ EKGANLPKEI SISHNKSHAK  720
LKEALALQNS NNSLTKELQT TALSKDSSNL SAITKTGSQL MMEEFLHIFQ AKDSAAASRT  780
VDVPLISNVD TNANCQNIIT DRELNNRPPR PGHMVDSKHS GMTEATQKEA NEHARIGNQA  840
CENKDPVNDX CGQKVGENLF VQKKFYEQTA KBSLGDCCQT APKRRKLDKF TLERTMCFGR  900
KQLFLSVLSL QKRKKKRCKR SRVNSRKGMK HKTGENPQSD DCGASTSKAV LNVSSNSIHS  960
SRKXSRSPLD LKKXSEGIND VKCCNGSSMN TNKGAMEEMS NKVLSAHEQS KNFLDSSADR  1020
HKARETAVLK NADHQVYLSL LMRGLKETHV AQWDDMDSPS FQSNGSXDAG NNAIGYVPDE  1080
WDEDYDRGKM KKMKKAKRSF DGPNPFQEAA NLKAQKKXNP NVNRRPSSAN TPFRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	883	919	KRRKLDKFTLERTMCFGRKQLFLSVLSLQKRKKKRCK
2	912	920	KRKKKRCKR
3	913	920	RKKKRCKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	1e-55	WRKY family protein

Link Out ? help Back to Top
Ensembl	Dr03370.1