PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03371.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 749aa MW: 80375.8 Da PI: 4.8712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03371.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	565	609	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+ s+ Dr03371.1 565 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVLSM 609 99*********************8.....6************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MDKDRSCSGG PIPAYSPRFL LSRWLSPSED GSLGCRVRFP RHGGKKRREG KGGNREESES 60 DGLRVVESLE VKEVVEQCGK ETFDSSGHES KDVSSLNLGM GVGLIFLLVR STTEFNKMTE 120 LRKEMEVLLR DVXCEIQKKD AVSTLADSSS ISFSVSDCSR NKNTSGNYRS SLCAIRTHCP 180 TEFDGSRSKC EIISEXTQYL KMDQMEAELE AEFQRLRLGL EDDNSSVLPQ HXETQLADGG 240 SSPTESLSEI FDGDDDINNE DSNEQFGVSP HELERKLHEL LEAQQQERIA ELESALELAE 300 QRLQEKEMEI CWWRDTAKLA SQRKDAALNR ALSLLLSIEV LARRKEKEVE DXISEITAMQ 360 PCSREMQAMA LQELQIAAHD DFFDQMLSSL PPSWPDLGNP KSPWDLAGKP QDDPAGEYPP 420 YDESSLLASR LRQHQISGGG GSGGSPAEKS MGLHLAQHQQ MMLAAGMGRS SPVGAGDGGL 480 IPMPLSLGNG GSSDSRLLLD RSRDEVDAAF KPPNSTLRIG AAHGASGKSA AFPAPPSSGN 540 TTTQAAAAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD 600 EIIDYVLSMS RLGGAAAVAP LVADVSSEAG RGGGGGSGGS DSLAVTEHQV AKLMEEDMGS 660 AMQYLQGKGL CLMPISLASA ISSATARTTS SLIPSSLNHI NSNNNNGGVG AGINGGDGPS 720 SPSMSVLTVQ SAMGAGSDTM KDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MDKDRSCSGG PIPAYSPRFL LSRWLSPSED GSLGCRVRFP RHGGKKRREG KGGNREESES  60
DGLRVVESLE VKEVVEQCGK ETFDSSGHES KDVSSLNLGM GVGLIFLLVR STTEFNKMTE  120
LRKEMEVLLR DVXCEIQKKD AVSTLADSSS ISFSVSDCSR NKNTSGNYRS SLCAIRTHCP  180
TEFDGSRSKC EIISEXTQYL KMDQMEAELE AEFQRLRLGL EDDNSSVLPQ HXETQLADGG  240
SSPTESLSEI FDGDDDINNE DSNEQFGVSP HELERKLHEL LEAQQQERIA ELESALELAE  300
QRLQEKEMEI CWWRDTAKLA SQRKDAALNR ALSLLLSIEV LARRKEKEVE DXISEITAMQ  360
PCSREMQAMA LQELQIAAHD DFFDQMLSSL PPSWPDLGNP KSPWDLAGKP QDDPAGEYPP  420
YDESSLLASR LRQHQISGGG GSGGSPAEKS MGLHLAQHQQ MMLAAGMGRS SPVGAGDGGL  480
IPMPLSLGNG GSSDSRLLLD RSRDEVDAAF KPPNSTLRIG AAHGASGKSA AFPAPPSSGN  540
TTTQAAAAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  600
EIIDYVLSMS RLGGAAAVAP LVADVSSEAG RGGGGGSGGS DSLAVTEHQV AKLMEEDMGS  660
AMQYLQGKGL CLMPISLASA ISSATARTTS SLIPSSLNHI NSNNNNGGVG AGINGGDGPS  720
SPSMSVLTVQ SAMGAGSDTM KDAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	570	575	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-29	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr03371.1