PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr03478.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family YABBY
Protein Properties Length: 174aa    MW: 19261.8 Da    PI: 8.4944
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr03478.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY204.93e-6321482170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve.keesastsvssek 100
                + + ++e+vCyv+Cn+CntilavsvP + +f++vtvrCGhC++ll+vn+    q l+  +          +      ++++++  + k++ +s+s+   +
  Dr03478.1   2 SAQLAPENVCYVHCNYCNTILAVSVPGNNVFNIVTVRCGHCSNLLAVNIGALLQSLPPPNL---------Q------GNQMEVGSSsKSNRTSASN---S 83 
                567789**********************************************999998873.........2......2222222220222222222...3 PP

      YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                +++++++ +p     irPPekrqrvPsaynrfikeeiqrik+ nPdishreafsaaaknWahfP+ihfgl
  Dr03478.1  84 VESDQQQMLP-----IRPPEKRQRVPSAYNRFIKEEIQRIKSMNPDISHREAFSAAAKNWAHFPHIHFGL 148
                3456666666.....9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MSAQLAPENV CYVHCNYCNT ILAVSVPGNN VFNIVTVRCG HCSNLLAVNI GALLQSLPPP  60
NLQGNQMEVG SSSKSNRTSA SNSVESDQQQ MLPIRPPEKR QRVPSAYNRF IKEEIQRIKS  120
MNPDISHREA FSAAAKNWAH FPHIHFGLTL DANKQAKLDE PISAQGSQKS QEFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-67YABBY family protein