PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03504.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 126aa MW: 15092.5 Da PI: 10.3475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03504.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.2e-18	42	97	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++++++q++ Le +Fe+++++ ++ LA++lg++ +qV vWFqNrR ++k+ Dr03504.1 42 KEKRRLNEDQVKLLEMHFEREQKLELGRKINLAEELGMDANQVAVWFQNRRVRWKH 97 567799************************************************95 PP
2	HD-ZIP_I/II	96.7	2.3e-31	43	125	2	84
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 krrl+++qvklLE++Fe+e+kLe rK +la+eLg+++ qvavWFqnrR R+k kqlE ++e+Lk+++ + +e+++Le+ev Dr03504.1 43 EKRRLNEDQVKLLEMHFEREQKLELGRKINLAEELGMDANQVAVWFQNRRVRWKHKQLEIEHEKLKAKHMVILAEKHQLENEV 125 69******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence
MISENITQVT SDQEMIKKAL SITDVTKKRA RKKVKMNGDD HKEKRRLNED QVKLLEMHFE 60 REQKLELGRK INLAEELGMD ANQVAVWFQN RRVRWKHKQL EIEHEKLKAK HMVILAEKHQ 120 LENEVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	99	RRVRWKHKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-26	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr03504.1