PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03509.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 692aa MW: 77831.5 Da PI: 7.5691

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03509.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	268	289	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+Cgk F ++ +L+ H + H Dr03509.1 268 CPKCGKGFVDPVLLVEHVERvH 289 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MGTPEFPDLG KHCSVEDCKL IDFLPFTCDR CSEVFCLQHR SYSKHLCPNX NLQDVTVLVC 60 PLCAKGVHLV PNQDPNITWE SHVNTDCDPS NYQKATKKRK CPVPGCKEIL TFSNTIRCRD 120 CTQEHCLKHR FGPDHKCPGP KKPDTSFPFI SLLRRSQKSE SVTSRSSNVP VRSQSSNGSS 180 WWGSGLVNAA SSVRASAESS IQRLSDVTAQ ALQKAKEGMS QNNNNALVEQ CPQCPAKFSS 240 VSALIEHSER NHNRGIPPGQ YGVTIDACPK CGKGFVDPVL LVEHVERVHG GTSTFKXKER 300 EPSGTQIIKA RERNFSGFSN PDPQSLDFNL ANESSSQQSQ TVDDNDIKIE GSAFVXNEHP 360 SDDNGPPKVD SEVEVLHEKV TKQIIKDGHG HKPTKFSTCF LHYRAWVENT SQKFEDTWQE 420 QRPTELVLGK EKPQMVGLGI GVSGMKSGER ALLHVGWELG YGKEGSFSFP NVPPMADLLY 480 EVELIGFDEA KEGKARSDMT VEERIEAADR RKLEGNAYFK DEKLEEAMQQ YEMAIAYMGD 540 EFMFQLFGKY RDMALAVKNP CHLNMAACLI KLRRYEEAIA QCSIVLSEDE NNVKALFRRG 600 KAKAELGQTD GAREDFQKAK KIVPEDKTIA KELRLLAEHD KAVYQKQKEL YKGIFGPPPE 660 AKPQRRNWLV VFWQWLVSLF CRVFKLQKHK AD

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MGTPEFPDLG KHCSVEDCKL IDFLPFTCDR CSEVFCLQHR SYSKHLCPNX NLQDVTVLVC  60
PLCAKGVHLV PNQDPNITWE SHVNTDCDPS NYQKATKKRK CPVPGCKEIL TFSNTIRCRD  120
CTQEHCLKHR FGPDHKCPGP KKPDTSFPFI SLLRRSQKSE SVTSRSSNVP VRSQSSNGSS  180
WWGSGLVNAA SSVRASAESS IQRLSDVTAQ ALQKAKEGMS QNNNNALVEQ CPQCPAKFSS  240
VSALIEHSER NHNRGIPPGQ YGVTIDACPK CGKGFVDPVL LVEHVERVHG GTSTFKXKER  300
EPSGTQIIKA RERNFSGFSN PDPQSLDFNL ANESSSQQSQ TVDDNDIKIE GSAFVXNEHP  360
SDDNGPPKVD SEVEVLHEKV TKQIIKDGHG HKPTKFSTCF LHYRAWVENT SQKFEDTWQE  420
QRPTELVLGK EKPQMVGLGI GVSGMKSGER ALLHVGWELG YGKEGSFSFP NVPPMADLLY  480
EVELIGFDEA KEGKARSDMT VEERIEAADR RKLEGNAYFK DEKLEEAMQQ YEMAIAYMGD  540
EFMFQLFGKY RDMALAVKNP CHLNMAACLI KLRRYEEAIA QCSIVLSEDE NNVKALFRRG  600
KAKAELGQTD GAREDFQKAK KIVPEDKTIA KELRLLAEHD KAVYQKQKEL YKGIFGPPPE  660
AKPQRRNWLV VFWQWLVSLF CRVFKLQKHK AD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-110	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr03509.1