PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr03653.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 670aa    MW: 75438.6 Da    PI: 7.2749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr03653.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4219.9e-1293076692373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s++  e+ q l+++ +  +s +gdp+qRl ay++e+L ar  +s++++yk l++ e +  +s e l  ++++++++P++kf++++aN a
  Dr03653.1 307 KHLLIKCAEAMSDDRIEEFQYLVQEARCVVSIHGDPIQRLGAYMLEGLVARHEESGTNIYKGLKCHEPD--SSRELLYCMRILYDMCPYFKFGYMAANGA 404
                79****************************************************************998..59999999********************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                I ea+ +e+r+HiiDf+i qG+QW +L+qaLa+Rp+gpp++RiTg+++      ++l+ +g+ L+++ +++++pfefn+ +a  +e ++ ++L+++ gEa
  Dr03653.1 405 IAEALRTEDRIHIIDFQIAQGTQWTTLIQALAARPGGPPHVRITGISQ-----GDNLQLVGKXLHDMSRKFNIPFEFNP-LAVPCEVVTKDMLKIRGGEA 498
                ***********************************************9.....99************************.5999**************** PP

       GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                laVn+ lqlh+++desv+++++rd +L++vk+lsPkv+++veqe+++n+++Fl+rf+e+++yysa+++s++ +l+res+eri vE++++g++ivn++ace
  Dr03653.1 499 LAVNFTLQLHHTPDESVDVNNPRDGLLRMVKRLSPKVMTLVEQESNTNTSPFLTRFTETMDYYSAMMESIDDSLARESKERIGVEQHCMGKDIVNMIACE 598
                **************************************************************************************************** PP

       GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                g+er+erhe l+kWr rl +aGFk+ pls+++++ +k l++ ++ d y++ e++g+l+lgWk+r+L+s+SaW
  Dr03653.1 599 GKERVERHELLGKWRLRLCMAGFKQCPLSSYVNSVIKKLMACYS-DKYTLVEKDGALLLGWKGRSLISASAW 669
                ***************************************99988.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MQKTLARFEE YREMVKNRAS KLPKKHPRCL ADGNELLRFY GTTIXCSLGM NGSSSLCVLE  60
KCDVCRIIRH GFSAKKEMKG GVGVFTSSTS GRAFESVEIY EDADERCIRK ALLVCRVIAG  120
RVHKPLDNIQ EVTSQSGFDS LAGKVGLHAN IEELYLLNTR ALLPCFVLRM DSQQFFRYGY  180
TTDSXINYDL TSISNPVFSE WTLNSLKFNL XGSPNSPLSG HSSTGESPSM PVXVHPPDXT  240
XVXSEDIRHA LQELETVLMA PDTDEQPMTT STKTWAHLET LINSQPQARP HKRLKQFPDS  300
CPHNGVKHLL IKCAEAMSDD RIEEFQYLVQ EARCVVSIHG DPIQRLGAYM LEGLVARHEE  360
SGTNIYKGLK CHEPDSSREL LYCMRILYDM CPYFKFGYMA ANGAIAEALR TEDRIHIIDF  420
QIAQGTQWTT LIQALAARPG GPPHVRITGI SQGDNLQLVG KXLHDMSRKF NIPFEFNPLA  480
VPCEVVTKDM LKIRGGEALA VNFTLQLHHT PDESVDVNNP RDGLLRMVKR LSPKVMTLVE  540
QESNTNTSPF LTRFTETMDY YSAMMESIDD SLARESKERI GVEQHCMGKD IVNMIACEGK  600
ERVERHELLG KWRLRLCMAG FKQCPLSSYV NSVIKKLMAC YSDKYTLVEK DGALLLGWKG  660
RSLISASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-158GRAS family protein