PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03809.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 268aa MW: 31088.9 Da PI: 5.1279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03809.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.3e-17	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++ql++Le+ F +++++ +++ +L+ l+L+ rqV vWFqNrRa+ k Dr03809.1 89 KKRRLSPSQLHALEQSFDLDNKLDPDRKLRLSLDLSLQPRQVAVWFQNRRARFK 142 56689***********************************************98 PP
2	HD-ZIP_I/II	111.9	4.2e-36	89	180	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls q+++LE+sF+ ++kL+p+rK +l+ +L lqprqvavWFqnrRAR+ktkqlE+d+++L+++y++l+ + ++L+++++ L +++ke Dr03809.1 89 KKRRLSPSQLHALEQSFDLDNKLDPDRKLRLSLDLSLQPRQVAVWFQNRRARFKTKQLERDFSSLRSSYNSLQLQLDSLRHQNHLLLSDIKE 180 9***********************************************************************************99999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MKRRCLSSQP LGDGLLANDE EDIINTTTLS FQPIITQQQQ QQQQQHKQED QEEDDEEEDN 60 YSSEALSSHH HHHHHHHHQQ QQPSMLSDKK RRLSPSQLHA LEQSFDLDNK LDPDRKLRLS 120 LDLSLQPRQV AVWFQNRRAR FKTKQLERDF SSLRSSYNSL QLQLDSLRHQ NHLLLSDIKE 180 LKRKLEEKQT TSKGGGGGGG GGSSDSDSSA IMNEKQKSED QIKKGNENED QVVRFAEEEE 240 EEMEEPCSSF FNDEQPPSLL SWYCSDWC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARFKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-22	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr03809.1