PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03885.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 1475aa MW: 163927 Da PI: 6.3547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03885.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	1389	1407	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk+Fs++ + +rH+r H Dr03885.1 1389 GCGKMFSSHALAMRHQRAH 1407 7****************98 PP
2	zf-C2H2	11.2	0.0012	1443	1469	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg +F+ s++ rH r+ H Dr03885.1 1443 YKCKvaGCGLTFRFVSDFSRHRRKtgH 1469 9**********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1475 aa Download sequence
MVSSDPPTIT IPGWLETLPH APVYRPTISD FSDPISFISR IEHEASRFGI CKVIPPLPRA 60 SKSTTLQHLH SSLRIPFSTR CQELGSKKPS KTKQVWQSGD SYTIEQFEAK SKAFAKSQLH 120 GLKEVTPLLV ESLFWNAVAE KPITVEYAND VPGSAFAPRR KKRKREEGTP RSLSDSPWNL 180 QGVARSPGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HMGAPKTWYA 240 VPGEYAASLE EVVRVKGYGG NVDRLAAFMM LGEKTTLLLP EVLVEAGIPC CRLVQYPGEF 300 VVTFPRAYHV GFSHGFTCGE AANFATPQWL KVAKEAAVRR TAMNHLPMLS HQQLLYMLTM 360 SFISRKIVHL IPAQVFLKNL NLKLVVPRPV LSGVRSSRLR DREKERELLI KEAFLNDMMD 420 ENRKLHSLLE KESIPTVVLW EPELLPSASN VSQLNSSSTI HDTQLSVIDA EQGSDVNCKF 480 KTMCDTVSXN RQLKEILCEE TMGLTSIATH DISSGMTVKD VNTCCRSSNE ETVGKMDDDD 540 DEEEEEEEAE EEEVLPFGLN VDSGTLACVA CGVLGFPFMA IVQPELFSLS NDESYQKSEK 600 SGWLKPCLPS YVQRTXKLGS DTKDSCLESE EQPNQESGPD SSSQLCGHIP AAECQGNACG 660 SKLLKNVSQZ STSCVTKLVK VTCGRFGDXD SEYIKARIFC LQHAIEIADL FRCKGGARIL 720 IICHSDYLKI KALAIAVAEE IGMQFNFKDF PIEDASATDL DLINFSIDGG EEHEDWTSKL 780 GINLRYCIKV RKQSSSNQEP LPLSLSKLFA DSPHLSVVST LKWLSRKSRT PYKVVGKSYS 840 KTHIVKDTVN DEALKVCQNH KRRPSFITAK HHGQHSKGQL EESHGXRGTK SVDDGNDHSR 900 TSGFLLCKDN LELFCTDSLV TVPVLAAERL HMHQDSWPTQ KTNPLCIACD SSPSDKRDVH 960 VNSAVKGCER QQVLNSNEEA SQTLLCDSVN SGFCQSSSDL SMFENAEAHQ SGLVADAVPT 1020 GCKTGDFEES ESEINIVVQE VESLEVLKEI IVAEDSYPLK FGRTQAPANK PTPEXETIAH 1080 EKLEGDDLVH NTGLESSXLK FALKVDQSIP QLVSHNNSVP LENLEVSASE LVNAELDVCS 1140 KLNNNESDID DSQPQQNHIL GSKESSLQCN GEDQXRQLGC EYVIDKPELQ QNIKASADXE 1200 INGSMASEAE TSEIPLDASX VDCINLLQDI SVKLPHSVGR AKGLVMPQLS NGXIDVNSVP 1260 EDVSVQNGVI RNNVRPIIVY KRAERPKKKQ KSEAEPMSNV HLSSNEFIRS PCEGLRPRTG 1320 RRSLDETADV GAAEKGEGYK TKKRDRPAGQ SIXQKAEGTY ICDIDGCLIS FRTKRELDRH 1380 RDNRCIFKGC GKMFSSHALA MRHQRAHEDE RPLKCPWKGC GMSFKWAWAR TEHVRLHTGE 1440 RPYKCKVAGC GLTFRFVSDF SRHRRKTGHS GNSKT

Sequence ? help Back to Top

Protein Sequence Length: 1475 aa Download sequence

MVSSDPPTIT IPGWLETLPH APVYRPTISD FSDPISFISR IEHEASRFGI CKVIPPLPRA  60
SKSTTLQHLH SSLRIPFSTR CQELGSKKPS KTKQVWQSGD SYTIEQFEAK SKAFAKSQLH  120
GLKEVTPLLV ESLFWNAVAE KPITVEYAND VPGSAFAPRR KKRKREEGTP RSLSDSPWNL  180
QGVARSPGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HMGAPKTWYA  240
VPGEYAASLE EVVRVKGYGG NVDRLAAFMM LGEKTTLLLP EVLVEAGIPC CRLVQYPGEF  300
VVTFPRAYHV GFSHGFTCGE AANFATPQWL KVAKEAAVRR TAMNHLPMLS HQQLLYMLTM  360
SFISRKIVHL IPAQVFLKNL NLKLVVPRPV LSGVRSSRLR DREKERELLI KEAFLNDMMD  420
ENRKLHSLLE KESIPTVVLW EPELLPSASN VSQLNSSSTI HDTQLSVIDA EQGSDVNCKF  480
KTMCDTVSXN RQLKEILCEE TMGLTSIATH DISSGMTVKD VNTCCRSSNE ETVGKMDDDD  540
DEEEEEEEAE EEEVLPFGLN VDSGTLACVA CGVLGFPFMA IVQPELFSLS NDESYQKSEK  600
SGWLKPCLPS YVQRTXKLGS DTKDSCLESE EQPNQESGPD SSSQLCGHIP AAECQGNACG  660
SKLLKNVSQZ STSCVTKLVK VTCGRFGDXD SEYIKARIFC LQHAIEIADL FRCKGGARIL  720
IICHSDYLKI KALAIAVAEE IGMQFNFKDF PIEDASATDL DLINFSIDGG EEHEDWTSKL  780
GINLRYCIKV RKQSSSNQEP LPLSLSKLFA DSPHLSVVST LKWLSRKSRT PYKVVGKSYS  840
KTHIVKDTVN DEALKVCQNH KRRPSFITAK HHGQHSKGQL EESHGXRGTK SVDDGNDHSR  900
TSGFLLCKDN LELFCTDSLV TVPVLAAERL HMHQDSWPTQ KTNPLCIACD SSPSDKRDVH  960
VNSAVKGCER QQVLNSNEEA SQTLLCDSVN SGFCQSSSDL SMFENAEAHQ SGLVADAVPT  1020
GCKTGDFEES ESEINIVVQE VESLEVLKEI IVAEDSYPLK FGRTQAPANK PTPEXETIAH  1080
EKLEGDDLVH NTGLESSXLK FALKVDQSIP QLVSHNNSVP LENLEVSASE LVNAELDVCS  1140
KLNNNESDID DSQPQQNHIL GSKESSLQCN GEDQXRQLGC EYVIDKPELQ QNIKASADXE  1200
INGSMASEAE TSEIPLDASX VDCINLLQDI SVKLPHSVGR AKGLVMPQLS NGXIDVNSVP  1260
EDVSVQNGVI RNNVRPIIVY KRAERPKKKQ KSEAEPMSNV HLSSNEFIRS PCEGLRPRTG  1320
RRSLDETADV GAAEKGEGYK TKKRDRPAGQ SIXQKAEGTY ICDIDGCLIS FRTKRELDRH  1380
RDNRCIFKGC GKMFSSHALA MRHQRAHEDE RPLKCPWKGC GMSFKWAWAR TEHVRLHTGE  1440
RPYKCKVAGC GLTFRFVSDF SRHRRKTGHS GNSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	165	RRKKRKR
2	159	166	RRKKRKRE
3	160	165	RKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-155	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr03885.1