PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04021.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family SBP
Protein Properties Length: 356aa    MW: 38739.8 Da    PI: 9.5195
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04021.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.9e-41124200177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q
  Dr04021.1 124 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVIAAGLSQRFCQQCSRFHVLSEFDQGKRSCRKRLADHNRRRRKSQ 200
                6**************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MQDFHRMMLM QLVNVDGYDG KRKKLNKLHY SPPSSPFLFL TLLLYLFAQA QAQPAPTFSA  60
AGLFPMASST SSSTSCHQRY GLALPPAPAR IGLNLGVRTY FSSASPDEGM VVGRVCRRRA  120
RAARCQAEGC GADLTHAKHY HRRHKVCEFH SKASIVIAAG LSQRFCQQCS RFHVLSEFDQ  180
GKRSCRKRLA DHNRRRRKSQ DLMTMTTTPV ATTTTNTNTN ALNETNNTGE TPGEKILFTS  240
ASSSSTNNPQ PPFMGCITEP ESPCTGMTSP TAPPSQVVAP QMALGLGCYS HDSGVMVVPA  300
SAGLSGSSST GTSPQDTPSF LPTGLGDHFR MNVHHRFPSW SDGEDGSTMR DLFQSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-42SBP family protein