PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04026.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 488aa MW: 52864.1 Da PI: 6.7702

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04026.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.2	2e-15	279	324	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq Dr04026.1 279 HNQSERKRRDRINEKMRTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 324 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MSQCVPTCDT DDPPNMTANA PPTLLHHHHH QHHPSNRPHV SSEYEVAELT WENGNVAMHG 60 LGHARISKPI AKYPSTTGST VGWDKQHQSG TLESIVDQAT NNQIQVSSPG HPSFMSWLGG 120 AHPHVAASGV DALVPSSNSF GHRAVEASDQ VPNLPSVDGS SAGGGGRGRK RTRGGEGVWG 180 CPSQGSVAPT VMTLDDTCEF YGGEDVGFTT TSSPDGEADD GGGLPDTENT SLGGHDSFCQ 240 SKRSQKRDAV ADEEGEKVNK GELGMSSLST KRSRAAAIHN QSERKRRDRI NEKMRTLQKL 300 VPNSSKTDKA SMLDEVIDYL KQLQAQVQMM NRMSGFPQMM MPMAMPQLQM SLMANMAHMA 360 QMTQMGLGMG MGMGMMDMAA INRAGHPAIP PLLHPSAFAS LAAGGSWEAS GDRMQPPGAP 420 VPMDSLSAFM AHPSQPMSMD AYSKMAALYQ RLYQQQQHLQ QQQQQDQQQQ QHLQQQQQQQ 480 QSNPKRTI

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MSQCVPTCDT DDPPNMTANA PPTLLHHHHH QHHPSNRPHV SSEYEVAELT WENGNVAMHG  60
LGHARISKPI AKYPSTTGST VGWDKQHQSG TLESIVDQAT NNQIQVSSPG HPSFMSWLGG  120
AHPHVAASGV DALVPSSNSF GHRAVEASDQ VPNLPSVDGS SAGGGGRGRK RTRGGEGVWG  180
CPSQGSVAPT VMTLDDTCEF YGGEDVGFTT TSSPDGEADD GGGLPDTENT SLGGHDSFCQ  240
SKRSQKRDAV ADEEGEKVNK GELGMSSLST KRSRAAAIHN QSERKRRDRI NEKMRTLQKL  300
VPNSSKTDKA SMLDEVIDYL KQLQAQVQMM NRMSGFPQMM MPMAMPQLQM SLMANMAHMA  360
QMTQMGLGMG MGMGMMDMAA INRAGHPAIP PLLHPSAFAS LAAGGSWEAS GDRMQPPGAP  420
VPMDSLSAFM AHPSQPMSMD AYSKMAALYQ RLYQQQQHLQ QQQQQDQQQQ QHLQQQQQQQ  480
QSNPKRTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	GRKRTRG
2	283	288	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-63	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr04026.1