PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04043.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 284aa MW: 31918.5 Da PI: 6.7072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04043.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W+tI++ g++R+ k+c++rw +yl Dr04043.1 14 KGPWTPEEDITLVSYIQEHGPGNWRTIPANTGLKRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Dr04043.1 67 RGNFTDQEEKLIIHLQALLGNR-WAAIAAYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MGRPPCCDKL GVKKGPWTPE EDITLVSYIQ EHGPGNWRTI PANTGLKRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIAAYLPERT DNDIKNYWNT HLRKKLSKTH 120 ELSSNKSNSK GQWERRLQTD INMAKQALID ALSLEKSPTS DDHTHELKNS SGYCSATYAA 180 SAENISKLLE GWMRNTKKHS ESNTSEACSV SSTTKPLPET LFGLDSETPE ASETSLLHGE 240 SKASMEASTS FSXLETWLFD ESVEQKQDDL LDVSLVDTCQ LFSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-107	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr04043.1