PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04119.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 237aa MW: 26653.4 Da PI: 8.0456

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04119.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.7e-08	15	34	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f+ G Ck+G CkFaH++ Dr04119.1 15 YFLMPGGCKFGKDCKFAHDQ 34 8999**************86 PP
2	zf-CCCH	34.1	4.5e-11	55	78	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++++rtG Cky ++CkF+H+ Dr04119.1 55 ARECSYYMRTGGCKYANNCKFHHP 78 589********************9 PP
3	zf-CCCH	31	4.4e-10	193	219	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Dr04119.1 193 PGQPECQHFMKTGSCKFKSSCKFHHPK 219 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MAHEIHDNGR WIVQYFLMPG GCKFGKDCKF AHDQEMNEEG SVELNFLGLP VRPGARECSY 60 YMRTGGCKYA NNCKFHHPDP IAVGGREPRD HPSKYNQGHT PVVSQLPATS WPMQIGSNEP 120 VTFLNPSPHF MPGMILPPQG LHPTPEWNGF QAPVNPFYLQ PAPPPPHPEM FVQYAPPNPV 180 HQQVYIDEFP DRPGQPECQH FMKTGSCKFK SSCKFHHPKS RSVKASPSMV RPVSSVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-46	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr04119.1