PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04201.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 402aa MW: 45188.5 Da PI: 7.9117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04201.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	201	247	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N +f++Lr+llP+ K + a++L k+ +Y+k L Dr04201.1 201 VSHMISERRRREKLNGSFDQLRSLLPPG-----SKKDRATVLMKTKDYLKTL 247 68999*******************95.....49999**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MTIKQGIKQF VTLSKLITKA SMDEWFFDSD LTYNGGLPWW EPEGSNEITR EMDVMQFFSE 60 DLSEFDNNGN SSSASSLPSL STGSSEPRRQ WSIQLPDGSE DEVLTRAMVA VISSASPSSC 120 SSSSTSSLSS PSMQSLIDKT RNYGQFTSFR IYSPILASAS AVNCDPKTNL HSQKMIKKSI 180 TMLQRINKMR NQEPALTSNQ VSHMISERRR REKLNGSFDQ LRSLLPPGSK KDRATVLMKT 240 KDYLKTLKDQ ISELQLENRM LEMKLKCPAT DEINEQHLKA SNFRSTLRVE IIKASAPSSE 300 VQQISLRLTA NVNSALIDLV LHVLECLKEM RVLALVSVDG NIHTAQMNLH ARATIEFQIK 360 ACDWYEELFK EAMTRSIKRV ARLELVNFEG LYSGDGQLIH GV

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MTIKQGIKQF VTLSKLITKA SMDEWFFDSD LTYNGGLPWW EPEGSNEITR EMDVMQFFSE  60
DLSEFDNNGN SSSASSLPSL STGSSEPRRQ WSIQLPDGSE DEVLTRAMVA VISSASPSSC  120
SSSSTSSLSS PSMQSLIDKT RNYGQFTSFR IYSPILASAS AVNCDPKTNL HSQKMIKKSI  180
TMLQRINKMR NQEPALTSNQ VSHMISERRR REKLNGSFDQ LRSLLPPGSK KDRATVLMKT  240
KDYLKTLKDQ ISELQLENRM LEMKLKCPAT DEINEQHLKA SNFRSTLRVE IIKASAPSSE  300
VQQISLRLTA NVNSALIDLV LHVLECLKEM RVLALVSVDG NIHTAQMNLH ARATIEFQIK  360
ACDWYEELFK EAMTRSIKRV ARLELVNFEG LYSGDGQLIH GV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	ERRRRE
2	208	213	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-22	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr04201.1