PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04255.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 236aa MW: 27417.3 Da PI: 9.8044

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04255.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.4	1.4e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Dr04255.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58 79***********************************************8 PP
2	K-box	111.1	1.2e-36	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s +ea+++++qqe++kL+++i nLq+++R+l+Ge L+++sl++L+qLe++Lek+++kiR+kKnell++++e++qk+e elq++n++Lr+k+ e Dr04255.1 81 SIKEADSQYYQQEASKLRQQITNLQNSNRNLMGEALSTMSLRDLKQLENRLEKGISKIRTKKNELLYAEVEYMQKREIELQNDNMYLRNKITE 173 478999************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANS 60 SVRTTIERYK KACSGSPNTG SIKEADSQYY QQEASKLRQQ ITNLQNSNRN LMGEALSTMS 120 LRDLKQLENR LEKGISKIRT KKNELLYAEV EYMQKREIEL QNDNMYLRNK ITENERVQQQ 180 MSMLPGNTMM TMTMSSTPAY ELMPPFDARG FLQVNLMEQN QHYSHQQQQQ TTLQLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-102	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr04255.1