PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04296.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 647aa MW: 71650 Da PI: 6.7628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04296.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	148	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +++P++ kK++Ka++L A++Y+k+Lq Dr04296.1 148 DHIIAERKRREKLSQKFIALSSIIPNL-----KKMDKATVLGDAIKYVKQLQ 194 5999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MDALSARWFS EQGVDDLNSL TNQWELSSLD DFIIQPYPQD HIQQCLSSSS SSFQSHATSS 60 SITPQPLNIS VDIEKPKKML KTNSWNSRQA PDASPTSILS FSSGLDSPVK RKNDKEFIIE 120 DVKPKDLGIL FDSNSKRNLS TKPPSYQDHI IAERKRREKL SQKFIALSSI IPNLKKMDKA 180 TVLGDAIKYV KQLQERVKTL EEETKKKKRK GDHELSSSRS SEDKEDDMND QQYDHDSIPE 240 IEAKAFGSAN AKVSSETLNP SAPKAISDLR DAIVRGLGIQ GQEGLKVSGF DVRDALVGQS 300 VAYEFDIEVD KKTIPIKLLE DVNRWEFVDL PMFRTEEGGE KGLAEMGRTR EHSRVSPVLS 360 PFQLAGPMEL WIQDGDDLRL SLPHDVEAGT LKKVILSDGA VVTVKGARSV SLRHPLELPL 420 PLNRTYHKGR SMASGLMSIA EALRQTARSN EKPLLSLRIV GPTSLTSSPS TSPNDKLKLK 480 LLAPGLVELS TRSVPVVXDN VDRPSSYGAT LWPLTSLNGS NSNLRGFEEL LASVLGKKVD 540 EEGSFKLVKA EVSARNYLKM GFSVEKSLLD GQVNWSGYPE WKTKPEKATS HFEVIARIED 600 NGKVIPERIA PVQPIEIQDT ISVSAQTGNI SFSQLPIVHP PPVYFTL

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MDALSARWFS EQGVDDLNSL TNQWELSSLD DFIIQPYPQD HIQQCLSSSS SSFQSHATSS  60
SITPQPLNIS VDIEKPKKML KTNSWNSRQA PDASPTSILS FSSGLDSPVK RKNDKEFIIE  120
DVKPKDLGIL FDSNSKRNLS TKPPSYQDHI IAERKRREKL SQKFIALSSI IPNLKKMDKA  180
TVLGDAIKYV KQLQERVKTL EEETKKKKRK GDHELSSSRS SEDKEDDMND QQYDHDSIPE  240
IEAKAFGSAN AKVSSETLNP SAPKAISDLR DAIVRGLGIQ GQEGLKVSGF DVRDALVGQS  300
VAYEFDIEVD KKTIPIKLLE DVNRWEFVDL PMFRTEEGGE KGLAEMGRTR EHSRVSPVLS  360
PFQLAGPMEL WIQDGDDLRL SLPHDVEAGT LKKVILSDGA VVTVKGARSV SLRHPLELPL  420
PLNRTYHKGR SMASGLMSIA EALRQTARSN EKPLLSLRIV GPTSLTSSPS TSPNDKLKLK  480
LLAPGLVELS TRSVPVVXDN VDRPSSYGAT LWPLTSLNGS NSNLRGFEEL LASVLGKKVD  540
EEGSFKLVKA EVSARNYLKM GFSVEKSLLD GQVNWSGYPE WKTKPEKATS HFEVIARIED  600
NGKVIPERIA PVQPIEIQDT ISVSAQTGNI SFSQLPIVHP PPVYFTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	ERKRRE
2	154	159	RKRREK
3	205	210	KKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-20	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr04296.1