PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04310.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 592aa    MW: 65304.1 Da    PI: 4.9821
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.79.4e-1072275923374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                + Ll+cA+ ++++d  la + L r+++ as +gdp++R+a+yf+eAL +rl+r       a +ps+  +++ ++++  +k++++++P+ kf+hltaNqaI
  Dr04310.1 227 RSLLDCAR-LADSDPDLAAKSLIRIRQSASDHGDPTERVAFYFAEALYRRLSR-------ASSPSTIFDSSPEDVTLCYKTLNDACPYSKFAHLTANQAI 318
                789****9.667799**************************************.......333333334457889999********************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                lea+e+++r+Hi+D+++ qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g   + +l +tg rL++fA+ l+++fef++ v + +++l+  +++v+p+
  Dr04310.1 319 LEATESSTRIHIVDLGVVQGIQWAALLQALATRSAGKPsRVRISGIPAPSLGpnPAASLAATGARLRDFAALLDLEFEFEP-VLTPVNELTELSFHVDPD 417
                **********************************776669*********9999999*************************.7999****999******* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E++aVn++lql++ l es+++ +   ++L++ ksl+P+vv++ e ea++n+  F++rf++al++ysa+f+sle  l r+s +r+ vEr+llg +i  vv 
  Dr04310.1 418 ESVAVNFMLQLYNWLGESTESVE---RILRTAKSLNPTVVTLGEYEASLNGVGFVDRFSNALSFYSAFFNSLEPALNRDSPDRVLVERVLLGHRILRVVG 514
                ***************77777766...9************************************************************************9 PP

       GRAS 300 ce.gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 e g ++r r+e++ekW + +e++GF++vpls++a++qaklll +++ s  y++ +++  ++ l  +d++L+svS+Wr
  Dr04310.1 515 PEdGPDQRVRMEEKEKWTALMERCGFESVPLSHYAESQAKLLLWNYNySAKYSLLDSRPGFLsLAFEDHSLLSVSSWR 592
                8736789****************************************9999*99877777666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    
MAYMCADSGN LMAIAQQVIQ QKQQQQQQQQ QQQQQQQHLQ LQPPPPTISA INPFSSPWPG  60
HPPNPSHLHD FHPFALTDPP FSDPFSSDFP PPAPFRLSTA PEFDSDEWME SLIGESPTES  120
SDLISDAWHG PPATNELPSL FSADPFASSP ASTSDLNRVV FSDTQKLAPS LSGHHQLSSL  180
QTVNPTPPSF QIHSFDPPPP QPQHPKKDGK RSPASSDPKT LSSPLLRSLL DCARLADSDP  240
DLAAKSLIRI RQSASDHGDP TERVAFYFAE ALYRRLSRAS SPSTIFDSSP EDVTLCYKTL  300
NDACPYSKFA HLTANQAILE ATESSTRIHI VDLGVVQGIQ WAALLQALAT RSAGKPSRVR  360
ISGIPAPSLG PNPAASLAAT GARLRDFAAL LDLEFEFEPV LTPVNELTEL SFHVDPDESV  420
AVNFMLQLYN WLGESTESVE RILRTAKSLN PTVVTLGEYE ASLNGVGFVD RFSNALSFYS  480
AFFNSLEPAL NRDSPDRVLV ERVLLGHRIL RVVGPEDGPD QRVRMEEKEK WTALMERCGF  540
ESVPLSHYAE SQAKLLLWNY NYSAKYSLLD SRPGFLSLAF EDHSLLSVSS WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-165GRAS family protein