PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04317.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

YABBY

Protein Properties

Length: 188aa MW: 21233.3 Da PI: 9.1793

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04317.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	59	2e-18	2	63	2	65
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshlde 65 d ++ se++Cyv+C++Cnt+lav vP++ l+ +vtv+CGhC +l ++ + +++ s+ + Dr04317.1 2 DFVTPSEHLCYVRCTYCNTVLAVGVPFKRLMDTVTVKCGHCNHLSFLS--PRPLVQPLCSDYQM 63 67889************************************9876544..44444444444444 PP
2	YABBY	91.2	2.6e-28	81	143	100	162
YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 + s++++ +p++ v++PPek+ r Psaynrf+keeiqrika+ Pdi hreafs+aaknWa Dr04317.1 81 HSSTSSEPLSPKPAFVVKPPEKKHRLPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 143 335566666788778**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MDFVTPSEHL CYVRCTYCNT VLAVGVPFKR LMDTVTVKCG HCNHLSFLSP RPLVQPLCSD 60 YQMSFQSPCS DCMKGQPLTH HSSTSSEPLS PKPAFVVKPP EKKHRLPSAY NRFMKEEIQR 120 IKAAKPDIPH REAFSMAAKN WAKCDPRNSS ASNADKDRPA RNIAHQNERG SGFSMENFNA 180 LKQLEHKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-51	YABBY family protein

Link Out ? help Back to Top
Ensembl	Dr04317.1