PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04319.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9138.54 Da PI: 9.8575

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04319.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.5e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kR+ng+ KKA+EL vLC++eva+iifss gkl e+ss Dr04319.1 9 KRIENKINRQVTFAKRKNGLVKKAHELAVLCEVEVALIIFSSXGKLTEFSS 59 79***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRKNGLVK KAHELAVLCE VEVALIIFSS XGKLTEFSST 60 RLLDNLVEFT IELSYILIID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	7e-31	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr04319.1