PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04321.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 75aa    MW: 8620 Da    PI: 10.5367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04321.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.81.2e-32959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  Dr04321.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTRGKLYEYST 59
               79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST RGKLYEYSTE  60
SRISGIDFVL KEFSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-37MIKC_MADS family protein