PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04352.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 715aa    MW: 79448.2 Da    PI: 4.7215
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04352.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1982137156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +rk +++t++q++e+e++F+++++p+ ++r+eL++ +gL+  q+k+WFqN+R++ k
  Dr04352.1  82 KRKYHRHTQSQIQEMEAFFRECPHPDDKQRKELSRAIGLDPLQIKFWFQNKRTQVK 137
                79999***********************************************9877 PP
2START162.92.3e-512404591205
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a++e v +a++ ep+W++      e++n+ +++q+f+++ +     +++ea r+++vv+ ++++  e l+d + qW   ++    +a+tl+v+s+
  Dr04352.1 240 ELAVAAMEEIVGMAQLCEPLWMSRFdqplEILNEGIYIQNFSKGLGekltgFKTEATRETAVVPLNAVNIIEMLMDAN-QWMAFFPsivsRAATLDVLSN 338
                57899******************99999*************88777********************************.*******9************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m+a +q+ + lvp R+ +f+Ry++q+ +++w++vdvS+d  ++++  s     +++pSg+lie++++g skvtwveh+++++  + ++
  Dr04352.1 339 GaaetfnGALQVMSAMFQMATQLVPsREGLFIRYCKQHAEKTWAVVDVSIDCLRPNS--SMTW--RRRPSGCLIEEMAEGFSKVTWVEHMEVDDGNVAEI 434
                *******************************************************97..3444..48********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqce 205
                +++lv+sgla+ga++wv +l+rqc 
  Dr04352.1 435 YKPLVNSGLAFGAQRWVLALKRQCH 459
                ***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    
MMMPESHVAE VAGGEYEMQP ELNPGQDVGS NFYPEMEDID IMDTDEDELQ RLLEVEFEDR  60
TGSDNGEFVP DDEQNTRRLI KKRKYHRHTQ SQIQEMEAFF RECPHPDDKQ RKELSRAIGL  120
DPLQIKFWFQ NKRTQVKTQN ERNENSHLRA ENMRLSTENT IMKEVLSHGL CTNCGNSMEL  180
GQLAFEGNDL RVENAKLRDE IERISSIATK YAEKQPMISH QHSSLAIDGG VGIEKPVIIE  240
LAVAAMEEIV GMAQLCEPLW MSRFDQPLEI LNEGIYIQNF SKGLGEKLTG FKTEATRETA  300
VVPLNAVNII EMLMDANQWM AFFPSIVSRA ATLDVLSNGA AETFNGALQV MSAMFQMATQ  360
LVPSREGLFI RYCKQHAEKT WAVVDVSIDC LRPNSSMTWR RRPSGCLIEE MAEGFSKVTW  420
VEHMEVDDGN VAEIYKPLVN SGLAFGAQRW VLALKRQCHC LASVHNDEVV DQIGALTSML  480
MRKNWMKLSE RMVRIFTNGV SSAASDQWSL VAGTGANYDV KATTRKSMNE PGSPPGIILN  540
ATTSVWLQAP ARSVFNFLHS ENSRRQWDIL TNNGVIEQVC QIANGGSHGN CISLLRVKNE  600
SLPSSMMILQ ESSYDASGAY VIYAPLDETA MGLVLKNDEP DFVALLPSGF AVSPDGPAGL  660
LNGGNAAGSL LTVSFQILLN AAPAERISLA SISTINSLIA FTIERIKSAV SCDDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein