PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04459.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 455aa MW: 51629.1 Da PI: 8.847

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04459.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9.2e-14	185	232	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l ++ +++G W ++++ g++R++k+c++rw++yl Dr04459.1 185 KGAWSEEEDSRLRRCMEKYGAIKWCDVPSKAGLTRCRKSCRLRWLNYL 232 79********************************************97 PP
2	Myb_DNA-binding	50.8	3.7e-16	238	288	1	48
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 rgr+ +E++ll++++k+lG++ W++Ia +++ gRt++++k++w++yl Dr04459.1 238 RGRFEDDEEDLLIRLHKLLGNRqvfnLWSLIAGRLP-GRTANDIKNHWNTYL 288 89********************************.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MHRDANSNPN LTGKXRRHSG CSTASTSKMV VLSPSLSLSV SLSLSMFPLS CGDELLSPVA 60 RLGWLPESIA HKLASAINIC HXRGVYHRDL KLENLLFDDE DNLKVAGFVL SSRWICANIG 120 VNSGDCNIQF YCIFTYSQIG CKSNYSKSMP DDSIEYQNTS TTVVQVLDKM EKSRAKDGKI 180 SALRKGAWSE EEDSRLRRCM EKYGAIKWCD VPSKAGLTRC RKSCRLRWLN YLSPSIKRGR 240 FEDDEEDLLI RLHKLLGNRQ VFNLWSLIAG RLPGRTANDI KNHWNTYLSK KIITTEKSWN 300 PKTIAKGTTS XKPREKKGEF EIIKPQPRTI PMTWSWSKDQ PEKGEFKIIK PQPWTIPVNW 360 RWLKDQPVHR GHFQDKSGIN IADPLRSSVN NNVTREESAT IIPEKLDDVF LGIDDMTVGE 420 MQNNFEVGNT GGNGDEQFFL QEDAGWAAFL LDLNL

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MHRDANSNPN LTGKXRRHSG CSTASTSKMV VLSPSLSLSV SLSLSMFPLS CGDELLSPVA  60
RLGWLPESIA HKLASAINIC HXRGVYHRDL KLENLLFDDE DNLKVAGFVL SSRWICANIG  120
VNSGDCNIQF YCIFTYSQIG CKSNYSKSMP DDSIEYQNTS TTVVQVLDKM EKSRAKDGKI  180
SALRKGAWSE EEDSRLRRCM EKYGAIKWCD VPSKAGLTRC RKSCRLRWLN YLSPSIKRGR  240
FEDDEEDLLI RLHKLLGNRQ VFNLWSLIAG RLPGRTANDI KNHWNTYLSK KIITTEKSWN  300
PKTIAKGTTS XKPREKKGEF EIIKPQPRTI PMTWSWSKDQ PEKGEFKIIK PQPWTIPVNW  360
RWLKDQPVHR GHFQDKSGIN IADPLRSSVN NNVTREESAT IIPEKLDDVF LGIDDMTVGE  420
MQNNFEVGNT GGNGDEQFFL QEDAGWAAFL LDLNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-51	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr04459.1