PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04589.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 244aa MW: 26477.2 Da PI: 8.2239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04589.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.1e-14	59	105	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ Kl+Ka+ L +++ ++k+L Dr04589.1 59 KSHSEAERRRRERINAHLSTLRGLIPSS-----DKLDKASLLAEVISHVKKL 105 58***********************8.....7**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGSFPIGDLR PFSGFCDGLE LPASSSLVMD GDRGELMRAG RGRSGGCGDL NDRAAMALKS 60 HSEAERRRRE RINAHLSTLR GLIPSSDKLD KASLLAEVIS HVKKLKSNAT EISKGCIVPS 120 EVDEARVETE SIGLNSEALM IKASLSCDDR PEILADLKQT LQTFKLKTLG AEISTLSGRM 180 KVVFLLACEG NISDTEGHLL TTSIQQALRS VLDRATSPQD FLLRASYPNK RRRIPLFESS 240 SSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	ERRRRE
2	66	106	RRRRERINAHLSTLRGLIPSSDKLDKASLLAEVISHVKKLK
3	230	234	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr04589.1