PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04721.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 879aa    MW: 95974.3 Da    PI: 6.5876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04721.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182077457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dr04721.1 20 YVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
               6789****************************************************97 PP
2START170.51.1e-531683752204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W +++++ ++l vi +g  g ++l++++++
  Dr04721.1 168 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRSLDVLTVIPTGngGNIELIYMQTY 266
                68999*****************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+  l++g++vi+++S+++++  p     +++vRa +lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + ++k+
  Dr04721.1 267 APTTLASaRDFWTLRYTTGLEDGSLVICERSLTPTTGGPAgppAPNFVRADMLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKM 366
                ************************************9999899********************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  Dr04721.1 367 TIAALRHIR 375
                ****99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    
MAMVTSGKDL GKGGIDVGKY VRYTPEQVEA LERVYSECPK PSSMRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMR  120
QQLHTASVAT TDPSCESVVT SGQHHQQQNP TPQHPQRDAN NPAGLLAIAE ETLAEFLSKA  180
TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI LKDRPSWFRD  240
CRSLDVLTVI PTGNGGNIEL IYMQTYAPTT LASARDFWTL RYTTGLEDGS LVICERSLTP  300
TTGGPAGPPA PNFVRADMLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE VLRPLYESPK  360
ILAQKMTIAA LRHIRQIALE TSGEVVYGGG RQPAVLRNFS QRLSRGFNDA VNGFADDGWS  420
LLGNDGVEDV TIVINSSPSK LLGTNVNSSG MFSSFGGGIL CAKASMLLQN VPPALLVRFL  480
REHRSEWADC GVDAYSAASL RASPYAVPGG RVNGGFFGGQ VILPLAHTVE HEEFLEVIRL  540
EGHGFGHDDV VLGRDMYLLQ LCSGVDENAV GACAQLVFAP IDESFADDAP LLPSGFRVIP  600
LDPKTETPAA TRTLDLASTL EVGSGAASRP NSDSASNAYN QRSVLTIAFQ FTYENHLREN  660
VAAMARQYVR SVVASVQRVA MAITPSRLGA HIGTKNPPGS PEALTLARWI SRSYRFHTGV  720
ELLRADTQAG DSLLKLLWHH TDAIMCCSLK ASDILSLTLK SQHKASIFAY NVSNNDSQPV  780
QASPVFTFAN QAGLDMLETT LVALQDINLE KILDDNGRKV LCSEFSKIMQ QGFAYLPSGV  840
CLSSMGRPVS YEQALAWKVM NEEDSPHCLA FMFMNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein