PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04878.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 340aa MW: 38065.4 Da PI: 6.7716

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04878.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	178	197	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Dr04878.1 178 FSCPVCFKTFNRYNNMQMHM 197 89*****************9 PP
2	zf-C2H2	14.6	9.6e-05	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Dr04878.1 262 FMCRKCGKAFAVRGDWRTHEKNC 284 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MADPYSNFFK GYYNYYHPYS SSSSSFFPTN TPSYNPNNTT QSPPPSPPLR EALPLLSLSP 60 KDNNNNSNNT SEPCLPFHED GNKNKALCDE DEDESVTVAL HIGLPSPTAT DLLSRVSCVS 120 TQEEEEEQDH GDKDGEDGGG GGDDVVPLGY PTSAIGKLNK GQYWIPTPAQ ILIGPTQFSC 180 PVCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGIQPTAML RLPCYCCSPG CRNNIDHPRS 240 KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR 300 SLKDHIKAFG HGHAAYGIDV FEEEDEPSSE IEQDCANASH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr04878.1