PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04897.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 315aa    MW: 34612.1 Da    PI: 9.2488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04897.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11245290655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+ l+P+      k  + ae+L  AveYIk+Lq
  Dr04897.1 245 SIAERVRRTRISERMRKLQVLVPNM----EKQTNTAEMLDFAVEYIKNLQ 290
                689*********************7....467*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MSSGPPGELL RYRSAPSSSL GEVCDDFHAA DHASSPESML ARFLSDLHTP LPTSPAPLPT  60
CRPMEHVGTL EPCSNLARHS SSPAEFFSHS NVDNGFGVMR SIGGVRNGND TMGEAGLQQS  120
RINQQISFSS RQSSIMSQIS EIGSECRAGG SPEESNLRSS NGNAGCYISG HSPGSFDESS  180
MLSNNFLAFK RDLKQAEPQS RGLTHQFSLP KTSSEMAAIE KLLQFQGSVP FKVRAKRGCA  240
THPRSIAERV RRTRISERMR KLQVLVPNME KQTNTAEMLD FAVEYIKNLQ KQVKVRILST  300
SHAYVKMSPL VYQYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-43bHLH family protein