PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04916.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 316aa MW: 34643.3 Da PI: 8.0272

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04916.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.8	1.6e-43	33	108	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Dr04916.1 33 RCQVEGCKLDLSDAKAYYSRHKVCGMHSKSPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 108 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MSSGMDMDSS SSSSSEKPSK KGKGLVQQQE PPRCQVEGCK LDLSDAKAYY SRHKVCGMHS 60 KSPMVIVAGL EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG HNERRRKPPP VPLSSRYGRP 120 TSFQEDNSSR YRSFLMDFTS YPRPPGREVW PTIRADDRSA SSNWQSGFSP AAARVPEHNA 180 SHQYMQGSIS GTLFSNQDVS QVESLTGVDE DSSCALSLLS TQPWCSTPGS QAQTVSANTS 240 FEGTTSLASN YADTTAYGVS SSSVGAIEVQ HEMAQFPGEL ELALQGGRRG LDIVPGKEYE 300 QSGRGHGHGH GMHWPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-53	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr04916.1