PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04956.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 1033aa MW: 114464 Da PI: 7.7715

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04956.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	124	201	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCevhsk++++lv +l qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Dr04956.1 124 ICQVDDCRADLSRAKDYHRRHKVCEVHSKTAKALVGNLIQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 201 5**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence
MEGEAGAQVA SPVIIHQPVD NQFHEPLMAK KRNLPWQNPS LSFTAKPSEL SIGTNPLPKV 60 VSDAEKKNKG EECSKVITLS KSLEDGENLT LKLASGAYLV EEQILRPTKK VRSSSPSSGV 120 NYPICQVDDC RADLSRAKDY HRRHKVCEVH SKTAKALVGN LIQRFCQQCS RFHPLTEFDE 180 GKRSCRRRLA GHNRRRRKTQ PEIASSHPSH PGCQETANKG GMEIVNLLAA LKQLKGANID 240 NLVSGPSLPD KDELVQILCR LNSASSMIST PKLPLPGGFD LPVSQTCQPV PLEASHKLSA 300 PSTRDLLAVL SATVAASSPV AISSLSQGSS DVNADVRAKI HHSNPEPDGV SHSKSYQMYP 360 TVEVGQHSSI LQSAVELCER PVEEAQSSLP FQLFSSIEND ASPKPQSRKY LSSDSSNQME 420 ERSPSSSPLV VQNLFPLRSE HECIKSDVTV VSREDMAVEA STSCPFQLFK EAERRDGNGV 480 VRSHPCHVGT DHSPSSSNSD SQDRTGRIIF KLFDKDPSTI PSTVRNEILN WLSHSPSEME 540 SYIRPGCVVL SVYTSMTSVA WDELEDGLYQ RVHLLLQSSD SDFWRKGRFL VRTSKQLVSY 600 KDGRIRLCKS RKTWSAPELF SVSPVAVVSG HETSLALRGR NLTVPGTKIH CTYMGVYTST 660 EVLGSVYPGT IYNDFSLESF SFSRGTPHAF GRCFIEVENG FKGNSFPIII ADSTICRELR 720 TLESEIEGHL GIADVILEDQ IYDYQQPKSR EDILHFLNEL GWLFQRKNKS SGPFLSEFSG 780 TRFKFLLTFS VERDWTALIK TLLDILVERS SKNHDMIQEY LEMLAEAQLL NRAVKRKCKR 840 MVDLLLRYSV NGVVDASKIY LFIPNVAGHG GLTPLHLAAS TQGSEDIVDA LTNDPQEIGL 900 NCWNSIWDDK GQSPCTYASM RHNHSYNSLV ARKLADKEKG QVSIAVQNGD LSSNMPHSVA 960 KPLYSRSCAQ CACIDASRIR PTTRSRGFLQ RPYLHSMLAI AAVCVCVCLF FRGSPDLGHV 1020 APFQWENLDF GPT

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence

MEGEAGAQVA SPVIIHQPVD NQFHEPLMAK KRNLPWQNPS LSFTAKPSEL SIGTNPLPKV  60
VSDAEKKNKG EECSKVITLS KSLEDGENLT LKLASGAYLV EEQILRPTKK VRSSSPSSGV  120
NYPICQVDDC RADLSRAKDY HRRHKVCEVH SKTAKALVGN LIQRFCQQCS RFHPLTEFDE  180
GKRSCRRRLA GHNRRRRKTQ PEIASSHPSH PGCQETANKG GMEIVNLLAA LKQLKGANID  240
NLVSGPSLPD KDELVQILCR LNSASSMIST PKLPLPGGFD LPVSQTCQPV PLEASHKLSA  300
PSTRDLLAVL SATVAASSPV AISSLSQGSS DVNADVRAKI HHSNPEPDGV SHSKSYQMYP  360
TVEVGQHSSI LQSAVELCER PVEEAQSSLP FQLFSSIEND ASPKPQSRKY LSSDSSNQME  420
ERSPSSSPLV VQNLFPLRSE HECIKSDVTV VSREDMAVEA STSCPFQLFK EAERRDGNGV  480
VRSHPCHVGT DHSPSSSNSD SQDRTGRIIF KLFDKDPSTI PSTVRNEILN WLSHSPSEME  540
SYIRPGCVVL SVYTSMTSVA WDELEDGLYQ RVHLLLQSSD SDFWRKGRFL VRTSKQLVSY  600
KDGRIRLCKS RKTWSAPELF SVSPVAVVSG HETSLALRGR NLTVPGTKIH CTYMGVYTST  660
EVLGSVYPGT IYNDFSLESF SFSRGTPHAF GRCFIEVENG FKGNSFPIII ADSTICRELR  720
TLESEIEGHL GIADVILEDQ IYDYQQPKSR EDILHFLNEL GWLFQRKNKS SGPFLSEFSG  780
TRFKFLLTFS VERDWTALIK TLLDILVERS SKNHDMIQEY LEMLAEAQLL NRAVKRKCKR  840
MVDLLLRYSV NGVVDASKIY LFIPNVAGHG GLTPLHLAAS TQGSEDIVDA LTNDPQEIGL  900
NCWNSIWDDK GQSPCTYASM RHNHSYNSLV ARKLADKEKG QVSIAVQNGD LSSNMPHSVA  960
KPLYSRSCAQ CACIDASRIR PTTRSRGFLQ RPYLHSMLAI AAVCVCVCLF FRGSPDLGHV  1020
APFQWENLDF GPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr04956.1