PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05004.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 257aa    MW: 28830.6 Da    PI: 9.5936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05004.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17111160154
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                s++kGVr+++ +g+W+AeIrdp     r  r++lg+++t+ eAa a+ aa +++ 
  Dr05004.1 111 SKHKGVRYRP-WGKWAAEIRDP----LRgVRVWLGTYDTEHEAALAYQAASRRID 160
                79********.**********7....246**********99******99988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MPGPQRQLVN QNRMRRKWGK SPDPKLRARP ESERQLRKLS VVFSDPDATD SSSDEDEPEY  60
ETRKKAKRVL REIPILPSLA IGPISFKPRK TLTASRAKNG KLLPSSSIGS SKHKGVRYRP  120
WGKWAAEIRD PLRGVRVWLG TYDTEHEAAL AYQAASRRID AEKRAAAAAA TVSGSSYQQP  180
NPNLFSVPSP ASVLDVFADA DSRMLTEFFV REDPLMTLPG FGLQPESPFW EHISSVSDLT  240
GLDFADLDEW MDFSFDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1616RQLVNQNRMRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-19ERF family protein