PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05007.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 183aa    MW: 19596.3 Da    PI: 5.674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05007.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.78.5e-294107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+pe+ r+ +++sl+yeA+ r+ +Pv+G++g+++ +++ql+++++e++
  Dr05007.1   4 SCNGCRVLRKACNETCAIRPCLhwiknPESQARATLFLAKFYGRAGLLNLLAAAPENMRPGVFRSLLYEACGRVVNPVHGSAGLLTGGSWQLCHEAVEAV 103
                6************************************************************************************************998 PP

     DUF260  96 llke 99 
                l ++
  Dr05007.1 104 LSGA 107
                8766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MRTSCNGCRV LRKACNETCA IRPCLHWIKN PESQARATLF LAKFYGRAGL LNLLAAAPEN  60
MRPGVFRSLL YEACGRVVNP VHGSAGLLTG GSWQLCHEAV EAVLSGAPIK QLGGQLAEAV  120
KIGEELSRVE EDGGSSVASM DSSHLSQTEP VEEDEVGLEL SLGLEPPANR SQPDDTCRLG  180
LRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-55LBD family protein