PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05028.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 1101aa MW: 120796 Da PI: 8.6165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05028.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	74	93	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Dr05028.1 74 PCTECGKHFTSWKALFGHMR 93 5******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1101 aa Download sequence
MARTTTTSMD HHHSQNMIPI DFTPPPKPSN NHHSMLQQCL TNTTGINIIN GKPKSRRKPN 60 PNSPILSGNT ATPPCTECGK HFTSWKALFG HMRCHPERPY RGINPPPALC KPLSLVSSNS 120 SFTADEFDVA KSLIMLSNGP PCSSRFACMS CMKGKRKGKK SLWKEMVGLS SSHKRGHFWD 180 LNLPPPLDDG TLGLVFEGPS SSSSSSSFYY HPSNLNPNPN LVEWIFKVVS FGCCVFVSVG 240 GVKRVSKRFG GDEKMPTSKL KLIADENCGG FPNSNKKSDA KQSFGLCDDD DGGDVGNGMK 300 TAGLVARLMG LETMPVVYQE KPRKALDSEL YFDRDESWDC SRLDQDLCTE MGGNGKIDSR 360 PQKIQKTGGF LEKQTVNASR FSSDAFRFNK SMLAGSKKQH HKLPTPVKSP RTLPRRSTVR 420 LMEAATKILD PGSHARNRAL TYIGSARASG GVQGSNVGLL SRNVKDSVVG SCRSCGGLVE 480 VPGLRLGECG SSTSDFSNAS CSDVGYEDIG IKPLDKVASL VDQVKTNAKN RASDNVEKKY 540 NIVEVREQRK CEEDAIPKPG PKVKNLRQNP VPSIKGKVNG KQDGRRYPNE VNRAKDFISS 600 SKNLNKTTVT RPTKAVATSH KMVGMERSVG GKHLIRKRRP AGGLQNENLC LSNSKLPQER 660 IAKGITTERS ISRNRIKSEV RKRADGDSTS GSKGSDAFSF TFTAPMRHGS SSSLYKGMAE 720 KSRSEDKHSG EFLNPKASSP ERKNGDSTSQ RATPLRGDAL SSLLEKKIRE LSSLDMDELA 780 KGDANLGRST ASILEELISA LTTGAPLPQK NSDCCMDEHS VTSNSCHDSD ELQNQVVAIT 840 KSLQEKEQSV FAAASPACEN DQCSPISILR VSFSNEGSLS ESPNGSSGCK PEVRLTESFN 900 NNTLQLDLDS DLLDSATSVI SEKFETQKSQ QSMNKFHPTG NVYSVSKLID VHKPISDIEL 960 LLDNIFFDQS NGNTFLLNIL ESILEAFGSC FREYDEPNAV RNFLYDCIME CLHSKTGCKA 1020 LMRSCQFFSR NRLKTEIFEE IRSWQSLSGK NTDDIIAKEM SRSIERWTTC EVDAFETGIE 1080 IQTDILQLLV DEVVVDLCHG S

Sequence ? help Back to Top

Protein Sequence Length: 1101 aa Download sequence

MARTTTTSMD HHHSQNMIPI DFTPPPKPSN NHHSMLQQCL TNTTGINIIN GKPKSRRKPN  60
PNSPILSGNT ATPPCTECGK HFTSWKALFG HMRCHPERPY RGINPPPALC KPLSLVSSNS  120
SFTADEFDVA KSLIMLSNGP PCSSRFACMS CMKGKRKGKK SLWKEMVGLS SSHKRGHFWD  180
LNLPPPLDDG TLGLVFEGPS SSSSSSSFYY HPSNLNPNPN LVEWIFKVVS FGCCVFVSVG  240
GVKRVSKRFG GDEKMPTSKL KLIADENCGG FPNSNKKSDA KQSFGLCDDD DGGDVGNGMK  300
TAGLVARLMG LETMPVVYQE KPRKALDSEL YFDRDESWDC SRLDQDLCTE MGGNGKIDSR  360
PQKIQKTGGF LEKQTVNASR FSSDAFRFNK SMLAGSKKQH HKLPTPVKSP RTLPRRSTVR  420
LMEAATKILD PGSHARNRAL TYIGSARASG GVQGSNVGLL SRNVKDSVVG SCRSCGGLVE  480
VPGLRLGECG SSTSDFSNAS CSDVGYEDIG IKPLDKVASL VDQVKTNAKN RASDNVEKKY  540
NIVEVREQRK CEEDAIPKPG PKVKNLRQNP VPSIKGKVNG KQDGRRYPNE VNRAKDFISS  600
SKNLNKTTVT RPTKAVATSH KMVGMERSVG GKHLIRKRRP AGGLQNENLC LSNSKLPQER  660
IAKGITTERS ISRNRIKSEV RKRADGDSTS GSKGSDAFSF TFTAPMRHGS SSSLYKGMAE  720
KSRSEDKHSG EFLNPKASSP ERKNGDSTSQ RATPLRGDAL SSLLEKKIRE LSSLDMDELA  780
KGDANLGRST ASILEELISA LTTGAPLPQK NSDCCMDEHS VTSNSCHDSD ELQNQVVAIT  840
KSLQEKEQSV FAAASPACEN DQCSPISILR VSFSNEGSLS ESPNGSSGCK PEVRLTESFN  900
NNTLQLDLDS DLLDSATSVI SEKFETQKSQ QSMNKFHPTG NVYSVSKLID VHKPISDIEL  960
LLDNIFFDQS NGNTFLLNIL ESILEAFGSC FREYDEPNAV RNFLYDCIME CLHSKTGCKA  1020
LMRSCQFFSR NRLKTEIFEE IRSWQSLSGK NTDDIIAKEM SRSIERWTTC EVDAFETGIE  1080
IQTDILQLLV DEVVVDLCHG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	3e-22	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr05028.1