PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05051.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 977aa MW: 109688 Da PI: 7.9029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05051.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.1e-07	98	143	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 ++ +rRRd + ++++Lr++lPka +K s a+ Le ++YI++Lq Dr05051.1 98 TIARKRRRDIMIRKLSTLRDMLPKA-----RKfESRAALLEDIIKYIQYLQ 143 56789*****************9.....788***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence
MDAGLHARLE SIEQELYLPF SHDEEEKLYN HISSIMNPDD YFYSLLHDSS PVISNAAGVP 60 SARTADVGRE KNKKIINHRR PDVSAPSDRR RRAMQMQTIA RKRRRDIMIR KLSTLRDMLP 120 KARKFESRAA LLEDIIKYIQ YLQKQLQVMG NDIWYQTSPN PFRYYNILQF SPSSSSSSSM 180 GLSESGSPRV IIRRSEWESL FVNALVPSLS LHRCLRFPSI VSILVFHAGR RGFWSSGEAV 240 GIPPPLLPGL RFIQVVQFCK EWILKIKSFP EKENIQFQKK HNVVNNHAFG SNASSSAIST 300 PEENGHIHES ANGEESLQEF LKTNPRKELS HSSLEKERKL AQSKGKVSEE LSKVVASFKG 360 CKNLGMKKHF SSNSSAANGH TPKKHPRRGE HPIMLPPVEG LLDLKYDRTW ICKNSACKAK 420 LTAEDTFCKR CSCCICHHFD DNKDPSLWLV CSSETDDQDW CGLSCHIECA FQRQKVGVID 480 LGQSIQLDGS YCCASCGKVS GILGYWKKQL LIAKDARRVD VLCYRIFLSY RLLEGTSQFR 540 ELHEFVEDAK AKLETEVGPV NGVSAKMARG IVSRLSVAVE VQRLCSLAIE KADEWLCSTS 600 HSHLKLRDSL PAACKFQFEE VTSSSLVIVL KETSSASDSI KGYKLWYCNS RELPYSNDPV 660 VFPRVQRRIL ISNLQPCTEY AFRIISFTDD GDLGHSEAKC FTKSVEIIQK NTEQNGAEGC 720 SSSAKRGTKA PTNGSSGFKV RNLGKILRQA WAQDEGCCDW LSNDDVEEDS DGGSDAMRPD 780 GAEEDHAEPT VSRRLDLNVV SVPDLNVDAT PPPESSPEVE NVCSSEKNGQ ARSNGSGDSQ 840 TCAARLVEEV PAVESRPESR KRGASTQDET YDGGSTLVVG SPLRFSKGHG QLDDNYEYCV 900 KVIRWLECQG HIEKDFRMKF LTWFSMRSSA QERRVVITFI RTLIEEPSSL AGQLLDSFLE 960 IVTCKMPRIG FCSKLWH

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence

MDAGLHARLE SIEQELYLPF SHDEEEKLYN HISSIMNPDD YFYSLLHDSS PVISNAAGVP  60
SARTADVGRE KNKKIINHRR PDVSAPSDRR RRAMQMQTIA RKRRRDIMIR KLSTLRDMLP  120
KARKFESRAA LLEDIIKYIQ YLQKQLQVMG NDIWYQTSPN PFRYYNILQF SPSSSSSSSM  180
GLSESGSPRV IIRRSEWESL FVNALVPSLS LHRCLRFPSI VSILVFHAGR RGFWSSGEAV  240
GIPPPLLPGL RFIQVVQFCK EWILKIKSFP EKENIQFQKK HNVVNNHAFG SNASSSAIST  300
PEENGHIHES ANGEESLQEF LKTNPRKELS HSSLEKERKL AQSKGKVSEE LSKVVASFKG  360
CKNLGMKKHF SSNSSAANGH TPKKHPRRGE HPIMLPPVEG LLDLKYDRTW ICKNSACKAK  420
LTAEDTFCKR CSCCICHHFD DNKDPSLWLV CSSETDDQDW CGLSCHIECA FQRQKVGVID  480
LGQSIQLDGS YCCASCGKVS GILGYWKKQL LIAKDARRVD VLCYRIFLSY RLLEGTSQFR  540
ELHEFVEDAK AKLETEVGPV NGVSAKMARG IVSRLSVAVE VQRLCSLAIE KADEWLCSTS  600
HSHLKLRDSL PAACKFQFEE VTSSSLVIVL KETSSASDSI KGYKLWYCNS RELPYSNDPV  660
VFPRVQRRIL ISNLQPCTEY AFRIISFTDD GDLGHSEAKC FTKSVEIIQK NTEQNGAEGC  720
SSSAKRGTKA PTNGSSGFKV RNLGKILRQA WAQDEGCCDW LSNDDVEEDS DGGSDAMRPD  780
GAEEDHAEPT VSRRLDLNVV SVPDLNVDAT PPPESSPEVE NVCSSEKNGQ ARSNGSGDSQ  840
TCAARLVEEV PAVESRPESR KRGASTQDET YDGGSTLVVG SPLRFSKGHG QLDDNYEYCV  900
KVIRWLECQG HIEKDFRMKF LTWFSMRSSA QERRVVITFI RTLIEEPSSL AGQLLDSFLE  960
IVTCKMPRIG FCSKLWH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	105	RRRRAMQMQTIARKRRR
2	90	106	RRRRAMQMQTIARKRRR
3	101	105	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	7e-08	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr05051.1