PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05204.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 308aa MW: 34288.8 Da PI: 4.9373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05204.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	141	183	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Dr05204.1 141 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKDL 183 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MDLDDHPFMD SSWVDAFPFF SGEVACLDCF QETTTVPATT STSTSFNPTF FAADHLDSVV 60 NVGVANDNQM STGFDCCFGE VYGQISPSLP EFHHQVGGFL DRSVVERSET TAAAAAASAA 120 APVRAERKKR KVEGMPSKNL MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM 180 KDLLERIKML REEIEGGAGL QSENLLNIFK ELDTNEVLVR NSPKFDVERR DRDTRIEICC 240 AAKSGLLLST VSTLESLGLE IQQCVVSCFN DFGMQASCSE EVERRKEMSS EEIKQALFRN 300 AGYGGRCV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	149	RKKRKVEGMPSKNLMAERRRRKR
2	128	150	RKKRKVEGMPSKNLMAERRRRKR
3	129	151	RKKRKVEGMPSKNLMAERRRRKR
4	143	150	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr05204.1