PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05330.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 959aa MW: 106714 Da PI: 6.2407

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	380	402	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+C G+rC+F+Hgp Dr05330.1 380 APCYYFQQ-GFCLKGSRCPFMHGP 402 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence
MAPPGPSPPS GLSPGIRPGV SWANAVNMNS KPSTVEIPLH LQRDHLDKLK TSSKSSVTID 60 SDLWANARDA MQSSLYAKFX GKSLPLDQTK LALADTWRGL GAFSVADLPN GYYFIXCEXL 120 DMVNHLLWDG XWMVAGRILQ LAPWKESFQP AFEKLSMAAV WIQIFHLPME LWTGDILEMV 180 ASQFGRVLKV DDHSLDRSRA KFARVCVEVD LSQPLQLGTW VNYGDHSMLS QTLVVQTRIY 240 LFSIRAWIVP VGSKTSAGVF IFSSSAMAMG GGGASEEALK RSTDCVYFLA SPLTCKKGSE 300 CEYRHSESAR LNPKDCWYWQ SGSCLNPKCP FRHPPLEGLT GTSSGSAPAP APAPAPTQAL 360 APTQMTPAHG PSYNSIKQSA PCYYFQQGFC LKGSRCPFMH GPPPTGNPAL QYVAKGSPPT 420 AEPSQMLKKD SWGLKECNGQ QIFKVPAAKV PPAARNSVGR TETEPNNGPN NLLALRRHEL 480 ARSPPLHASL SSGNAESGLF NHQVQPVDEH PHNGREADEF LAESSPGFDV LVEDDVEDGY 540 FPNEDEFGMA SAPDGRRMNT VNGFDYHLSD YEAVPRYEMD RYDGMGEYDR YGQSHQHLGS 600 ELRRGSSKRV ADRQLMHERV REKKNLDQMD GSDLRHQLKR KRLNGSRSAI SPDRRARPYW 660 RDDHHAEKRY RDGTEERYRP DRRDQLRFPS ERPISTRLQG RITLPRRTSP VNSTDHRSDR 720 ELDRARHRGR SSPPRPINHQ RRRHLQDRIR RRPDEDFATD ARNSGGQAIN KDDSDSLDFA 780 GPKSLAELKV AKELKNSQEQ SGDSFNVIAT AEHKTVLDTV IISQESAGSK PLSVMLEGNC 840 EAAKGDAVIS NKSENGVSEP AASSHFHPIH TIHEANRDNE SAPRTVEKGV LTPVEVDHSE 900 MEEGAGAENV GEDHDLENGY DDAEGDAFKA EDDEYIYEEN EEELDEDDDF ARKVGSMFS

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence

MAPPGPSPPS GLSPGIRPGV SWANAVNMNS KPSTVEIPLH LQRDHLDKLK TSSKSSVTID  60
SDLWANARDA MQSSLYAKFX GKSLPLDQTK LALADTWRGL GAFSVADLPN GYYFIXCEXL  120
DMVNHLLWDG XWMVAGRILQ LAPWKESFQP AFEKLSMAAV WIQIFHLPME LWTGDILEMV  180
ASQFGRVLKV DDHSLDRSRA KFARVCVEVD LSQPLQLGTW VNYGDHSMLS QTLVVQTRIY  240
LFSIRAWIVP VGSKTSAGVF IFSSSAMAMG GGGASEEALK RSTDCVYFLA SPLTCKKGSE  300
CEYRHSESAR LNPKDCWYWQ SGSCLNPKCP FRHPPLEGLT GTSSGSAPAP APAPAPTQAL  360
APTQMTPAHG PSYNSIKQSA PCYYFQQGFC LKGSRCPFMH GPPPTGNPAL QYVAKGSPPT  420
AEPSQMLKKD SWGLKECNGQ QIFKVPAAKV PPAARNSVGR TETEPNNGPN NLLALRRHEL  480
ARSPPLHASL SSGNAESGLF NHQVQPVDEH PHNGREADEF LAESSPGFDV LVEDDVEDGY  540
FPNEDEFGMA SAPDGRRMNT VNGFDYHLSD YEAVPRYEMD RYDGMGEYDR YGQSHQHLGS  600
ELRRGSSKRV ADRQLMHERV REKKNLDQMD GSDLRHQLKR KRLNGSRSAI SPDRRARPYW  660
RDDHHAEKRY RDGTEERYRP DRRDQLRFPS ERPISTRLQG RITLPRRTSP VNSTDHRSDR  720
ELDRARHRGR SSPPRPINHQ RRRHLQDRIR RRPDEDFATD ARNSGGQAIN KDDSDSLDFA  780
GPKSLAELKV AKELKNSQEQ SGDSFNVIAT AEHKTVLDTV IISQESAGSK PLSVMLEGNC  840
EAAKGDAVIS NKSENGVSEP AASSHFHPIH TIHEANRDNE SAPRTVEKGV LTPVEVDHSE  900
MEEGAGAENV GEDHDLENGY DDAEGDAFKA EDDEYIYEEN EEELDEDDDF ARKVGSMFS

Link Out ? help Back to Top
Ensembl	Dr05330.1