PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05459.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 288aa MW: 32615.5 Da PI: 6.5554

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05459.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	118	137	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r n++ H+ Dr05459.1 118 FSCSVCNKSFNRYNNMQMHM 137 89*****************9 PP
2	zf-C2H2	16	3.4e-05	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Dr05459.1 202 FMCRKCGKPFAVKGDWRTHEKNC 224 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MAISENHLAQ TFIEWLKPPT TPSQQEQQPK KQEEGHCLPL LNRLEESHEK VMVKEEENEN 60 ESLQDMVTVA LHIGLPESAS SEGDLEMKDE SEGSTVASGS TRFWIPTPSQ ILIGPVQFSC 120 SVCNKSFNRY NNMQMHMWGH GSEYRKGPES LRGTQPLAML KLPCYCCAHG CKNNINHPRA 180 KPLKDFRTLQ THYKRKHGVK PFMCRKCGKP FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR 240 SLKDHVSGYG QSSGDNDDDD GDSFGEDSKA SVDDIHLEDH NFEDVTIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr05459.1