PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05468.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 224aa MW: 25219.3 Da PI: 9.2173

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05468.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	48.8	2e-15	104	139	1	36
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhkl 36 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa vhk+ Dr05468.1 104 PCAACKLLRRRCAEDCVFAPYFPADQPHKFASVHKV 139 7*********************************97 PP
2	DUF260	86.9	2.7e-27	139	221	4	98
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ck+lrr+Ca+dCv+apyfpa+qp+kfa vhk +lp ++r+da+sslvy+A+ar+rdPvyG+vg i++lqqq++ l+++la ++ Dr05468.1 139 VCKLLRRRCAEDCVFAPYFPADQPHKFASVHK------------ELPVQHRSDAVSSLVYQANARVRDPVYGCVGAISSLQQQVDALQTQLAIAQ 221 7***************************96............89*******************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MMTLELSRYH LNKEKAKLGG LRVAYDRKYI PGNLTSMLML VRGDSELNHR TLQAKFTPAH 60 DYLLQLPYDH ILTPGDLDPD SRGLEVIAIK LILMAWKRQG GGSPCAACKL LRRRCAEDCV 120 FAPYFPADQP HKFASVHKVC KLLRRRCAED CVFAPYFPAD QPHKFASVHK ELPVQHRSDA 180 VSSLVYQANA RVRDPVYGCV GAISSLQQQV DALQTQLAIA QAYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	8e-44	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr05468.1