PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05745.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 223aa MW: 24532.6 Da PI: 10.1755

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05745.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.6e-19	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v ++G+++W++I++ ++ gR++k+c++rw + Dr05745.1 16 KGPWSPEEDEALQRLVGKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	56.7	5.6e-18	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Dr05745.1 70 PFTPEEDETILRAHQRFGNK-WATIARLLS-GRTDNAIKNHWNST 112 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MAAPARGKET AAERIKGPWS PEEDEALQRL VGKHGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPQVEHRP FTPEEDETIL RAHQRFGNKW ATIARLLSGR TDNAIKNHWN STLKRKFSNG 120 GGGGGGGGGH HVQLQHYDSL PSDLEFHEDV HPLKRASSVG PVMSGGGLCF SPSSPSGSDV 180 SDSSHHSHPM MTPAVASQIY RPVPRLASFW LFILAFERFG LDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-66	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr05745.1