PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05751.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25354.2 Da    PI: 4.2584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05751.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-144292151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ienk +  + fskR  g l   eELS+LC+++va ++fs+tgk y +s+
  Dr05751.1 42 KKIENKKKLDICFSKRYRGFLSMVEELSILCGVDVAAVVFSPTGKAYSFSN 92
               68**********************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MESTPPLPPP PPSSSIPTIE DNNKKERKKR IIGKGRKKIE IKKIENKKKL DICFSKRYRG  60
FLSMVEELSI LCGVDVAAVV FSPTGKAYSF SNTSVEQLID KLPPMILHQD SHAIMEKLVD  120
EKFKEKEEDD DDDDDDDDDD DEDEDEEELN MKYDDEMVQE KMEELRGIIS LDSDNAGVXS  180
SSTSVIRSDH DDHSLVPCVF NPFLAAIGDL HLVLGPTAPS PSVPFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12538KERKKRIIGKGRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-11MIKC_MADS family protein