PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05759.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 532aa MW: 58440.8 Da PI: 5.792

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05759.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed llvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l Dr05759.1 40 KGPWTSAEDSLLVDYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	54.7	2.3e-17	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++++++++ q+G++ W++ a++++ gRt++++k++w++ Dr05759.1 93 KGAFTPEEEQKIIELHSQMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MIYKTDERHG RMGPKDKISS PSIDECVSGG SMGGGTPLKK GPWTSAEDSL LVDYVQKHGE 60 GNWNAVQKYS GLSRCGKSCR LRWANHLRPN LKKGAFTPEE EQKIIELHSQ MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RLRAGLPLYP SDMCLHPYNE NQPGLNASDD FNYDDNHSNE 180 LLHGNSFNFP GHMFDXMKVS QGLISYASPL MGFSPGNAIG RQGFGSQNYN FLNPTMNCTK 240 QLQESETLFP HVQDGIASRI PQVEPLSVSD RIPLKVHQPF GFPCDSDPCN KDLAPYGGAV 300 NGSHAHTLLN GNFSAPRPIT GSVELELPSL QYPDTDLGSW SASHAPPDPI DTYVQSPSGT 360 MSLQSDVESP RKSGLLEALI YEAQMLGNEK NNLSEKSSSS SVFTPCEAVE SAAANICEAD 420 YELFHDPISQ HTAPISENPF GAAASVESSS QLAPPDPSSW RPDFLLDSSW HVGNTNYHSM 480 FSNTIESLLN ADLSAEQKQS PVGPSSKFPK VQQLDSSTWN IMPRVCPISE LP

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MIYKTDERHG RMGPKDKISS PSIDECVSGG SMGGGTPLKK GPWTSAEDSL LVDYVQKHGE  60
GNWNAVQKYS GLSRCGKSCR LRWANHLRPN LKKGAFTPEE EQKIIELHSQ MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR RLRAGLPLYP SDMCLHPYNE NQPGLNASDD FNYDDNHSNE  180
LLHGNSFNFP GHMFDXMKVS QGLISYASPL MGFSPGNAIG RQGFGSQNYN FLNPTMNCTK  240
QLQESETLFP HVQDGIASRI PQVEPLSVSD RIPLKVHQPF GFPCDSDPCN KDLAPYGGAV  300
NGSHAHTLLN GNFSAPRPIT GSVELELPSL QYPDTDLGSW SASHAPPDPI DTYVQSPSGT  360
MSLQSDVESP RKSGLLEALI YEAQMLGNEK NNLSEKSSSS SVFTPCEAVE SAAANICEAD  420
YELFHDPISQ HTAPISENPF GAAASVESSS QLAPPDPSSW RPDFLLDSSW HVGNTNYHSM  480
FSNTIESLLN ADLSAEQKQS PVGPSSKFPK VQQLDSSTWN IMPRVCPISE LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	RIKRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	5e-98	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr05759.1