PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05809.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 278aa MW: 31102.6 Da PI: 6.507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05809.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++ +G+g+W++++ g+ R+ k+c++rw +yl Dr05809.1 14 KGPWTPEEDIILVSYIQDHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ +lG++ W++Ia++++ Rt++++k++w+++l Dr05809.1 67 RGNFTPHEEGMIIHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ DHGPGNWRSV PINTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKYH 120 QTTENFGNCX DLMTTSNSSI FPTYSQTSST YASSTENISR LLEGWMRTSS SSSSPKHIAA 180 ATMDQNNMIN SGSYVPASHG VFESMLSFDN LSSIAWEKSS AESAIFNGDS EGKERVESHN 240 NPPLSMLEKW LLDEATGQAE EDLMELSGGD QCSDSVIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-97	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr05809.1