PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05838.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRAS

Protein Properties

Length: 453aa MW: 49124.9 Da PI: 6.374

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05838.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	199.8	1.6e-61	230	398	3	176
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lLl+cAeav++++le+a++lL ++sela+p g++ qR+aayf eA++arl++s+ ++y+ lpps ++ + + ++a++lf+ +sP++kfsh+taNqaI Dr05838.1 230 TLLLQCAEAVAADNLEEANRLLLEISELATPFGTSAQRVAAYFSEAMSARLVSSCLGIYAPLPPSLAP-FQRHRLASAFQLFNGISPFVKFSHFTANQAI 328 79***********************************************************99997.67888899******************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ea+e+e+rvHiiD+di+qGlQWpaL++ La+Rp+gpp++R+Tg+gs s ++le+tg+ L++fA+++ ++f Dr05838.1 329 QEAFEREDRVHIIDLDIMQGLQWPALFNILATRPGGPPRVRLTGLGS----SLDSLEATGKCLSDFADRVFLSF 398 *******************************************....9**************987777 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MALFSDSPPF PFPPPPPPTN TPPNPLLNLL FLDNHHHSLP SSSSSMARKR PASDLDLHDT 60 PRPTRPRLPD PLPPPPPPPP PQVCGFSGLP LFPSDLDSTT TSTPFPSLPP PSQDDSPPSS 120 TIWIDTFIRD LLGSSAAADV SIPQLIQNVR DIVHPCNPSL ASALELRLLS LSSPLRPRSD 180 LPSSSSPAPP PPPPPPRPSD DQPPTLPPKD HHREELRQRK RDEEGLHILT LLLQCAEAVA 240 ADNLEEANRL LLEISELATP FGTSAQRVAA YFSEAMSARL VSSCLGIYAP LPPSLAPFQR 300 HRLASAFQLF NGISPFVKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPALFNILAT 360 RPGGPPRVRL TGLGSSLDSL EATGKCLSDF ADRVFLSFCG IAVNVVGKGE GKWGPRTEEK 420 PVMMVGRGRS FQGKWEEVRG SGLTSPTSGV HLC

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MALFSDSPPF PFPPPPPPTN TPPNPLLNLL FLDNHHHSLP SSSSSMARKR PASDLDLHDT  60
PRPTRPRLPD PLPPPPPPPP PQVCGFSGLP LFPSDLDSTT TSTPFPSLPP PSQDDSPPSS  120
TIWIDTFIRD LLGSSAAADV SIPQLIQNVR DIVHPCNPSL ASALELRLLS LSSPLRPRSD  180
LPSSSSPAPP PPPPPPRPSD DQPPTLPPKD HHREELRQRK RDEEGLHILT LLLQCAEAVA  240
ADNLEEANRL LLEISELATP FGTSAQRVAA YFSEAMSARL VSSCLGIYAP LPPSLAPFQR  300
HRLASAFQLF NGISPFVKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPALFNILAT  360
RPGGPPRVRL TGLGSSLDSL EATGKCLSDF ADRVFLSFCG IAVNVVGKGE GKWGPRTEEK  420
PVMMVGRGRS FQGKWEEVRG SGLTSPTSGV HLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	2e-89	GRAS family protein

Link Out ? help Back to Top
Ensembl	Dr05838.1