PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05912.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24049.6 Da    PI: 5.434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05912.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.6e-191866149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+ie++   +vtfskRr g++KKA+ LS+LC+a++a+++ s+tgk y +
  Dr05912.1 18 KKIESEDVCHVTFSKRRIGVFKKASDLSTLCGANIALVVHSPTGKPYSF 66
               68999999************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MQPSSTKKTK GRQKIEIKKI ESEDVCHVTF SKRRIGVFKK ASDLSTLCGA NIALVVHSPT  60
GKPYSFGCPD VEEVINRYFI GVTMDDVLGL TQGQGGHPTL LKELNEKFME ESKRIDDGKA  120
KKVMVEGAKK ELGNEKFILA MSSDMEELPL YELEGLEADL EKIKMRLDAS ARELLMNVNP  180
LDIIGTYNQD LAMAPFAGSG ANPFEGNMGF GFFGQGNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-26M-type_MADS family protein