PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05926.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27044.6 Da PI: 8.5857

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05926.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	98	152	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F++++ ++ ++++ LAk+l+L rqV vWFqNrRa+ k Dr05926.1 98 RKKLRLTKEQSSLLEKSFKEHPSLNPKQKQALAKHLNLRPRQVEVWFQNRRARTK 152 788899***********************************************98 PP
2	HD-ZIP_I/II	111.2	6.8e-36	98	185	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLE+sF+e+ L+p++K++la++L+l+prqv+vWFqnrRARtk kq+E+d +Lk+++++l++en +L+ke +eL+ Dr05926.1 98 RKKLRLTKEQSSLLEKSFKEHPSLNPKQKQALAKHLNLRPRQVEVWFQNRRARTKFKQTEVDLVFLKKWFETLTDENLKLRKELQELK 185 69*************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MDKGIEKEEE EGGGGEVCDI GLGLGLSNYK ESIVEPSLTL GLCVDAFGLE SKGKQTSLSQ 60 WKHCFGAKRN TEIQTDEAAT AKASFGRASD EEEDGGARKK LRLTKEQSSL LEKSFKEHPS 120 LNPKQKQALA KHLNLRPRQV EVWFQNRRAR TKFKQTEVDL VFLKKWFETL TDENLKLRKE 180 LQELKRYKFQ SSVNTKIATS TLSMCPKCQR MTGNDDGDHA VLQSSKPFFF DHFPYSATC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARTKFKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-44	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr05926.1