PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06032.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 195aa    MW: 20742.7 Da    PI: 8.4178
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06032.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.11.5e-292102196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C++lr++C+++Cvl+ ++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ ra +Pv Gavg+++ ++++l+++++e++
  Dr06032.1   2 SCNGCRILRKGCSEGCVLRTCLqwiegAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRAVNPVGGAVGLLWGGNWHLCEAAVEAV 101
                6*********************9999888899****************************************************************9987 PP

     DUF260  96 l 96 
                l
  Dr06032.1 102 L 102
                6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MSCNGCRILR KGCSEGCVLR TCLQWIEGAE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRAVNPVG GAVGLLWGGN WHLCEAAVEA VLCGAAPRPA PGIEAAGDLY  120
GRSSYSTAKR RKRFENPQSG TAACDLDLYL TPSSDGGRRR RPGSPSMNSE ESVTTTACGG  180
IEVDRRAPRL LNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-65LBD family protein